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BioLiP
>protein
MYLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVDLNR

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ief:A 55 54 1.0000 0.9818 1.0000 6.76e-35 2ief:B, 2ief:C, 5j0n:M, 5j0n:N, 2og0:B, 2og0:A, 6p0s:E, 6p0t:E, 6p0u:E, 6p0u:F, 1rh6:B
2 7v3u:6 646 29 0.2222 0.0186 0.4138 0.81 7qhs:6, 7v3u:F, 7v3v:6, 7v3v:F, 7w8g:6, 7w8g:F, 7z13:6, 7z13:e
3 5u8t:6 661 29 0.2222 0.0182 0.4138 1.6 6wgi:6
4 5v8f:6 692 29 0.2222 0.0173 0.4138 1.6 8b9a:6, 8b9b:6, 8b9c:6, 6eyc:6, 3ja8:6, 8kg6:6, 8kg8:6, 8kg9:6, 7p30:6, 7p30:E, 7p5z:6, 7p5z:E, 8p5e:6, 8p62:6, 8p63:6, 7pmk:6, 7pmn:6, 6ptn:m, 6ptn:6, 6pto:l, 6pto:6, 7pt6:6, 7pt6:F, 7pt7:6, 7pt7:F, 6rqc:6, 6skl:6, 6sko:6, 6u0m:6, 5u8s:6, 8w7m:6, 8xgc:6
5 8dvs:A 682 37 0.2407 0.0191 0.3514 4.6 7bah:A, 7bah:B, 7bai:A, 7bai:B, 7bai:E, 8dvu:A, 5f9f:A, 5f9f:C, 5f9f:E, 5f9f:G, 5f9f:I, 5f9f:K, 7jl1:A, 6kyv:B, 6kyv:D, 6kyv:F, 6kyv:H, 6kyv:J, 6kyv:L, 3lrn:A, 3lrn:B, 3lrr:A, 3lrr:B, 7mk1:A, 7mk1:B, 3ncu:A, 3ncu:B, 3og8:A, 3og8:B, 2qfb:A, 2qfb:B, 2qfb:C, 2qfb:D, 2qfb:E, 2qfb:F, 2qfb:G, 2qfb:H, 2qfb:I, 2qfb:J, 7tny:A, 7tnz:A, 7to0:A, 7to2:A
6 8itg:A 439 16 0.1481 0.0182 0.5000 5.0 8gq9:A, 8gqa:A, 8gqb:A, 8ith:A
7 8g7t:A 647 37 0.2407 0.0201 0.3514 5.6 4ay2:A, 4bpb:A, 8dvr:A, 8g7u:A, 8g7u:C, 8g7v:A, 8g7v:C, 8scz:A, 8sd0:A, 7tnx:A, 7to1:A, 2ykg:A, 3zd6:A
8 8fhd:A 1294 23 0.1667 0.0070 0.3913 5.9
9 2h4z:A 255 23 0.1667 0.0353 0.3913 5.9 2f90:A, 2f90:B, 2h4z:B, 2hhj:A, 2hhj:B, 7n3r:B, 7n3s:A, 7n3s:B, 7thi:A, 7thi:B
10 4gpu:A 331 30 0.1852 0.0302 0.3333 8.1
11 6eri:Az 191 32 0.2222 0.0628 0.3750 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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