Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQV
GVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQT
VCFEGVLTINDAPALIDLVQQGIGPAKSMGCGLLSLAPL

The query sequence (length=199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5cd4:A 199 199 1.0000 1.0000 1.0000 1.37e-149 5cd4:M, 4tvx:A, 4tvx:M, 4u7u:D, 4u7u:P
2 5h9f:K 159 199 0.7990 1.0000 0.7990 4.05e-101 5h9e:K
3 4qyz:K 152 198 0.7638 1.0000 0.7677 8.83e-98
4 2y8w:A 215 222 0.3417 0.3163 0.3063 4.67e-17 3qrp:A, 3qrq:A, 3qrr:A, 2y8y:A, 2y9h:A, 2y9h:C, 2y9h:E, 2y9h:G, 2y9h:I
5 2y9h:M 193 209 0.3317 0.3420 0.3158 6.09e-14 2y9h:K, 2y9h:O
6 8yha:B 268 270 0.3216 0.2388 0.2370 9.07e-06 8yb6:B
7 5u07:A 190 46 0.1156 0.1211 0.5000 2.93e-04
8 6c66:O 212 46 0.1156 0.1085 0.5000 3.50e-04 5u0a:A
9 3q2i:A 345 93 0.1407 0.0812 0.3011 0.95
10 4v5o:A1 67 49 0.0905 0.2687 0.3673 1.7 4bts:A1, 4bts:B1, 4bts:C1, 4bts:D1, 4v5o:B1
11 7b04:B 1120 42 0.0603 0.0107 0.2857 1.7 7b04:E, 7b04:H, 7b04:K, 7b04:N, 7b04:Q, 7b04:T, 7b04:W
12 8cdv:H 89 47 0.0754 0.1685 0.3191 3.4
13 7vpn:C 356 140 0.1558 0.0871 0.2214 3.8 7vpn:A, 7vpn:B, 7vpn:D
14 6n9m:A 331 43 0.0804 0.0483 0.3721 4.3
15 7ysi:A 143 28 0.0603 0.0839 0.4286 4.7
16 6sul:A 334 63 0.0804 0.0479 0.2540 4.9 6sul:B, 6sul:C, 6sul:D, 6sv5:A
17 3sqg:B 431 59 0.0955 0.0441 0.3220 6.7 3sqg:E, 3sqg:H
18 2aaz:A 305 42 0.0653 0.0426 0.3095 7.4 2aaz:B, 2aaz:C, 2aaz:D, 2aaz:E, 2aaz:F, 2aaz:G, 2aaz:H, 2aaz:I, 2aaz:J, 2aaz:K, 2aaz:L, 2aaz:M, 2aaz:N, 2aaz:O, 2aaz:P
19 2o2s:A 303 94 0.1206 0.0792 0.2553 8.1 3nj8:A, 3nj8:B, 4o1m:A, 4o1m:B, 4o1m:C, 4o1m:D, 4o1m:E, 4o1m:F, 2o2s:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218