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BioLiP
>protein
MYLSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT
RLQISLTEQGKAIKSPLAEISVKVFNEFNISEREASDIINNLRNFVSKNF

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3hsr:B 133 130 1.0000 0.9774 1.0000 5.23e-91 3hsr:A, 3hsr:C, 3hsr:D
2 1z9c:C 138 125 0.3538 0.3333 0.3680 5.09e-23 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F
3 5hli:A 146 106 0.2769 0.2466 0.3396 5.47e-14 5hlg:A, 5hlg:B, 5hlg:C, 5hlg:D, 5hlg:E, 5hlg:F, 5hlg:G, 5hlg:H, 5hlh:A, 5hlh:B, 5hlh:C, 5hlh:D, 5hlh:E, 5hlh:F, 5hlh:G, 5hlh:H, 5hli:B
4 6c7n:A 553 87 0.2154 0.0506 0.3218 0.045 6c7n:B, 6c7n:C
5 7nhk:0 495 90 0.1923 0.0505 0.2778 0.28
6 3spa:A 941 79 0.1615 0.0223 0.2658 0.30 7a8p:A
7 9bdc:E 990 79 0.1615 0.0212 0.2658 0.30 9bdd:E, 4boc:A, 5ola:E, 5ola:F, 8u8u:E, 8u8v:E
8 6erp:A 1011 79 0.1615 0.0208 0.2658 0.30 6erp:B, 6erq:A, 6erq:B
9 6c7n:D 389 88 0.2231 0.0746 0.3295 0.35
10 5cvi:B 215 94 0.2000 0.1209 0.2766 0.47 5cvi:A
11 7l19:C 129 81 0.1769 0.1783 0.2840 1.6 7l19:A, 7l19:B
12 8a3w:SE 260 46 0.0923 0.0462 0.2609 1.6 8a98:SE, 6az1:E, 8ovj:SE, 8rxh:SE, 8rxx:SE, 5t2a:1
13 5h3r:A 141 76 0.1692 0.1560 0.2895 1.9 5h3r:B
14 1ij6:A 305 61 0.1538 0.0656 0.3279 2.2
15 5z16:B 739 81 0.1538 0.0271 0.2469 2.5 5z16:A
16 6kbn:C 504 39 0.1000 0.0258 0.3333 3.5 6kbm:A, 6kbn:A
17 6ktb:B 138 57 0.1231 0.1159 0.2807 5.4
18 6jbx:A 146 39 0.1077 0.0959 0.3590 5.6 6jbx:B
19 8rw1:j 267 60 0.1231 0.0599 0.2667 6.7 8cas:j, 6fyx:j, 6fyy:j, 6gsm:j, 6gsn:j, 3j81:j, 3jap:j, 8s8d:j, 8s8e:j, 8s8f:j, 8s8g:j, 8s8h:j, 8s8i:j, 8s8j:j
20 5i2l:A 105 40 0.1154 0.1429 0.3750 6.9 5h0p:A, 5i2o:A, 5i2q:A, 7ygy:A
21 7ffp:A 240 79 0.1538 0.0833 0.2532 6.9 7c9b:A
22 6m3s:B 338 66 0.1462 0.0562 0.2879 8.1 6m3s:A
23 6pe2:A 456 54 0.1385 0.0395 0.3333 8.1 6p5a:A, 6p5a:G, 6pe2:G
24 7c3k:B 389 64 0.1538 0.0514 0.3125 9.2 7c3k:A, 8jqz:A, 8jqz:B
25 7tve:F 270 34 0.0923 0.0444 0.3529 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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