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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MYILDKIGLNIEILESLSYESKLGMSFKRTLSHFNKEEVLKEIELINNWYFSLEIIDDLPLDSRIKSVSSAKMKFERYYP
NATYNRVFNDILGFRVICKSYDEVLELEKEDKIRVVDMSRGKSNDDGFRGIHVYYQRDNHHYPIEIQFNTYYDRQLNDWL
HDK

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8pu1:B 191 163 1.0000 0.8534 1.0000 4.39e-119 8pu4:A, 8pu4:B, 8pu4:C
2 1w15:A 132 60 0.1104 0.1364 0.3000 0.99
3 3fp5:A 106 36 0.0736 0.1132 0.3333 2.1
4 3iqe:A 282 40 0.0859 0.0496 0.3500 2.8 3iqe:D, 3iqe:B, 3iqe:F, 3iqe:C, 3iqe:E, 3iqf:A, 3iqf:D, 3iqf:B, 3iqf:F, 3iqf:C, 3iqf:E, 3iqf:G, 3iqf:J, 3iqf:H, 3iqf:L, 3iqf:I, 3iqf:K, 3iqz:A, 3iqz:D, 3iqz:B, 3iqz:F, 3iqz:C, 3iqz:E
5 4iub:L 602 37 0.0675 0.0183 0.2973 3.2 5d51:L, 4iuc:L, 4iud:L, 5mdj:L, 5mdk:L, 5mdl:L, 7odg:L, 7odh:L, 8pou:L, 8pov:L, 8pow:L, 8pox:L, 8poz:L, 3rgw:L, 4ttt:L
6 7tmv:A 159 57 0.1043 0.1069 0.2982 3.2 7tmv:B
7 6ewz:A 202 105 0.1472 0.1188 0.2286 3.2 6ewz:B, 6ex0:A, 6ex0:B, 6fgx:A, 6fgx:B
8 5z75:A 306 44 0.0859 0.0458 0.3182 7.4 5z75:B, 5z75:D
9 7cgv:A 310 44 0.0859 0.0452 0.3182 8.5 7cgv:B, 7cgv:C, 7cgv:D
10 1iwa:A 473 19 0.0675 0.0233 0.5789 9.9 1bwv:A, 1bwv:C, 1bwv:E, 1bwv:G, 4f0h:A, 1iwa:C, 1iwa:E, 1iwa:I, 1iwa:K, 1iwa:M, 1iwa:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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