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BioLiP
>protein
MYGKLLICATASINVININHYIVELKQHFDEVNILFSPSSKNFINTDVLKLFCDNLYDEIKDPLLNNINIVENHEYILVL
PASANTINKIANGICDNLLTTVCLTGYQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFEISSGRYKNNI
TMPNIENVLNFVLN

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1g5q:A 174 174 1.0000 1.0000 1.0000 3.56e-124 1g5q:D, 1g5q:G, 1g5q:L, 1g63:A, 1g63:B, 1g63:H, 1g63:C, 1g63:J, 1g63:D, 1g63:F, 1g63:E, 1g63:G, 1g63:I, 1g63:L, 1g63:K
2 3qjg:A 171 168 0.5172 0.5263 0.5357 1.45e-64 3qjg:C, 3qjg:B, 3qjg:D, 3qjg:E, 3qjg:F, 3qjg:G, 3qjg:I, 3qjg:H, 3qjg:J, 3qjg:L, 3qjg:K
3 5h75:D 225 156 0.2701 0.2089 0.3013 2.42e-18 5h75:A, 5h75:B, 5h75:C, 1p3y:1
4 1e20:A 185 169 0.2931 0.2757 0.3018 1.46e-15 1mvl:A, 1mvn:A
5 7cfu:F 175 169 0.2069 0.2057 0.2130 3.63e-13 7cfu:H, 7cfu:S, 7cfu:T, 7cfu:P, 7cfu:A, 7cfu:B, 7cfu:C, 7cfu:D, 7cfu:E, 7cfu:G, 7cfu:I, 7cfu:J, 7cfu:K, 7cfu:L, 7cfu:M, 7cfu:N, 7cfu:O, 7cfu:Q, 7cfu:R, 7cfu:U, 7cfu:V, 7cfu:W, 7cfu:X
6 1qzu:A 160 113 0.2184 0.2375 0.3363 3.09e-12 1qzu:B, 1qzu:C, 1qzu:D
7 6jls:A 162 144 0.2241 0.2407 0.2708 6.63e-12
8 6tgv:C 389 174 0.1724 0.0771 0.1724 3.93e-09 8ow5:A, 8ow5:B, 8ow5:C, 8ow5:D, 8owb:A, 8owb:B, 8owb:C, 8owb:D, 8owp:A, 8owp:B, 8owp:C, 8owp:D, 8owq:A, 8owq:B, 8owq:C, 8owq:D, 8owr:A, 8owr:C, 8owr:D, 4qji:A, 4qji:B, 6tgv:A, 6tgv:B, 6tgv:D, 6th2:A, 6th2:C, 6thc:A, 6thc:B, 6thc:C, 6thc:D
9 6m8v:A 183 123 0.2126 0.2022 0.3008 8.81e-07
10 6eoa:A 193 90 0.1207 0.1088 0.2333 4.62e-04
11 6m8t:A 189 46 0.0920 0.0847 0.3478 0.38 6m8u:A
12 7vtn:A 692 30 0.0690 0.0173 0.4000 0.44
13 8fti:A 737 30 0.0690 0.0163 0.4000 0.44 7vti:A
14 3loq:A 273 79 0.1264 0.0806 0.2785 2.7 3loq:B
15 3wis:A 180 24 0.0632 0.0611 0.4583 4.3
16 2f7a:B 213 90 0.1322 0.1080 0.2556 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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