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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MYGKLLICATASINVININHYIVELKQHFDEVNILFSPSSKNFINTDVLKLFCDNLYDEIKDPLLNHINIVENHEYILVL
PASANTINKIANGICDNLLTTVCLTGYQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNNNITMPNIENVLNF
VLN

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1g5q:A 174 174 0.9939 0.9310 0.9310 4.01e-111 1g5q:D, 1g5q:G, 1g5q:L, 1g63:A, 1g63:B, 1g63:H, 1g63:C, 1g63:J, 1g63:D, 1g63:F, 1g63:E, 1g63:G, 1g63:I, 1g63:L, 1g63:K
2 3qjg:A 171 168 0.5399 0.5146 0.5238 9.98e-59 3qjg:C, 3qjg:B, 3qjg:D, 3qjg:E, 3qjg:F, 3qjg:G, 3qjg:I, 3qjg:H, 3qjg:J, 3qjg:L, 3qjg:K
3 1e20:A 185 140 0.2883 0.2541 0.3357 4.78e-16 1mvl:A, 1mvn:A
4 5h75:D 225 140 0.2577 0.1867 0.3000 5.33e-16 5h75:A, 5h75:B, 5h75:C, 1p3y:1
5 7cfu:F 175 165 0.2086 0.1943 0.2061 2.53e-14 7cfu:H, 7cfu:S, 7cfu:T, 7cfu:P, 7cfu:A, 7cfu:B, 7cfu:C, 7cfu:D, 7cfu:E, 7cfu:G, 7cfu:I, 7cfu:J, 7cfu:K, 7cfu:L, 7cfu:M, 7cfu:N, 7cfu:O, 7cfu:Q, 7cfu:R, 7cfu:U, 7cfu:V, 7cfu:W, 7cfu:X
6 1qzu:A 160 112 0.2393 0.2437 0.3482 2.46e-13 1qzu:B, 1qzu:C, 1qzu:D
7 6jls:A 162 144 0.2454 0.2469 0.2778 3.69e-13
8 6tgv:C 389 168 0.1779 0.0746 0.1726 5.74e-09 8ow5:A, 8ow5:B, 8ow5:C, 8ow5:D, 8owb:A, 8owb:B, 8owb:C, 8owb:D, 8owp:A, 8owp:B, 8owp:C, 8owp:D, 8owq:A, 8owq:B, 8owq:C, 8owq:D, 8owr:A, 8owr:C, 8owr:D, 4qji:A, 4qji:B, 6tgv:A, 6tgv:B, 6tgv:D, 6th2:A, 6th2:C, 6thc:A, 6thc:B, 6thc:C, 6thc:D
9 6m8v:A 183 123 0.2270 0.2022 0.3008 5.93e-07
10 6eoa:A 193 115 0.1472 0.1244 0.2087 5.15e-05
11 7vtn:A 692 30 0.0736 0.0173 0.4000 0.38
12 8fti:A 737 30 0.0736 0.0163 0.4000 0.38 7vti:A
13 6m8t:A 189 46 0.0982 0.0847 0.3478 0.67 6m8u:A
14 3wis:A 180 52 0.0982 0.0889 0.3077 2.0
15 3loq:A 273 79 0.1350 0.0806 0.2785 2.2 3loq:B
16 6gsn:p 658 51 0.0920 0.0228 0.2941 3.2 8cah:p, 8cas:p, 6fyx:p, 6fyy:p, 6gsm:p, 6zce:p, 6zu9:p
17 4uer:b 572 51 0.0920 0.0262 0.2941 3.6
18 6nts:A 583 82 0.0982 0.0274 0.1951 3.7 6iur:F, 8twe:A
19 8oh8:BBB 303 68 0.0982 0.0528 0.2353 5.9 8ofk:AAA, 8ofk:BBB, 8ofk:CCC, 8ofk:DDD, 8oh8:AAA, 8oh8:CCC, 8oh8:DDD, 8oih:AAA, 8oih:BBB, 8oih:CCC, 8oih:DDD, 8oiw:AAA, 8oiw:DDD, 8oiw:BBB, 8oiw:CCC
20 7km3:F 190 110 0.1534 0.1316 0.2273 6.5 7km2:L, 7km2:D, 7km2:I, 7km2:A, 7km2:B, 7km2:K, 7km2:C, 7km2:E, 7km2:J, 7km2:F, 7km2:G, 7km2:H, 7km3:L, 7km3:D, 7km3:I, 7km3:A, 7km3:B, 7km3:G, 7km3:K, 7km3:C, 7km3:E, 7km3:H, 7km3:J
21 7r6q:i 58 25 0.0552 0.1552 0.3600 7.5
22 1c7n:A 394 40 0.0675 0.0279 0.2750 7.6 1c7n:B, 1c7n:C, 1c7n:D, 1c7n:E, 1c7n:F, 1c7n:G, 1c7n:H, 1c7o:A, 1c7o:B, 1c7o:C, 1c7o:D, 1c7o:E, 1c7o:F, 1c7o:G, 1c7o:H
23 2f7a:B 213 90 0.1411 0.1080 0.2556 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218