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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MYDVTEWKHVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYF
IPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLE
YSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAAVK

The query sequence (length=226) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3vzx:B 228 226 1.0000 0.9912 1.0000 3.84e-168 3vzx:A, 3vzy:A, 3vzy:B, 3vzz:A, 3vzz:B, 3w00:B
2 4nae:A 219 225 0.5885 0.6073 0.5911 2.04e-96 4nae:B
3 2f6x:A 231 216 0.3805 0.3723 0.3981 2.64e-52 2f6x:B
4 6nke:A 249 225 0.2832 0.2570 0.2844 4.78e-11
5 4mm1:A 238 216 0.2876 0.2731 0.3009 3.07e-10 4mm1:B, 4mm1:C, 4mm1:D, 4mm1:E, 4mm1:F
6 4jej:A 241 216 0.2478 0.2324 0.2593 3.17e-05
7 6jo3:A 247 212 0.2389 0.2186 0.2547 0.002
8 3b0v:C 315 44 0.0664 0.0476 0.3409 0.81 3b0p:A, 3b0p:B, 3b0u:X, 3b0u:Y, 3b0v:D
9 8fy9:B 241 51 0.0752 0.0705 0.3333 2.8 8fy9:E, 8fya:E, 8fyc:F
10 7les:A 449 58 0.0619 0.0312 0.2414 4.0 8ekt:A, 8ekt:B, 8ekt:C, 8ekt:D, 8ekt:E, 8ekt:F, 7les:B, 7les:C, 7les:D, 6q2c:A, 6q2c:B, 6uw2:A, 6uw2:B, 6uw2:C, 6uw2:D, 6uw2:E, 6uw2:F, 7uwp:A, 7uwp:B, 6ux0:A, 6ux0:B, 6ux0:C, 6ux0:D, 6ux0:E, 6ux0:F
11 8fyc:C 310 51 0.0752 0.0548 0.3333 4.3 8fy9:C, 8fy9:F, 8fya:B, 8fya:C, 8fya:F, 8fyb:B, 8fyb:C, 8fyb:E, 8fyb:F, 8fyc:E, 8fyc:B, 8fyd:B, 8fyd:E, 8fyd:F, 8fyd:C
12 3wwo:B 257 81 0.1018 0.0895 0.2840 4.9 3wwo:A
13 3sqs:A 386 73 0.1062 0.0622 0.3288 7.1
14 6r5i:A 733 69 0.0973 0.0300 0.3188 8.4 6r5i:B, 6r5n:B, 6r5n:A, 6r5o:B, 6r5o:A, 6r5p:B, 6r5p:A, 6r5r:B, 6r5r:A, 6r5t:B, 6r5t:A, 6r5u:B, 6r5u:A, 6r5v:B, 6r5v:A
15 4zlf:A 785 44 0.0664 0.0191 0.3409 9.8 4zlg:A, 4zli:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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