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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MWERDRVIVLGHRGYMSNYPENTLLAFRKAVEAGADGIELDVWLTKDGRVVVMHDETIDRTSNMKGRQKDMTLEELKKAD
VGQGERIPTLEEVFEAIPRNALVNVELKDRDAAREVAEIVAENNPERVMISSFDIDALREYRKYDDETTMGLLIDREEVV
PLIPKLKDELNLWSVNVPMEAIPLIGLEKTLQALHWVRSLGLKVVLWTENDVLFYKDDNLAKLKGLFEVVIANDVVRMIE
YLKKLGLR

The query sequence (length=248) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4oec:A 248 248 1.0000 1.0000 1.0000 0.0 4oec:B, 4oec:C, 4oec:D
2 7e2b:A 253 248 0.7621 0.7470 0.7621 4.25e-146
3 2pz0:B 243 257 0.3992 0.4074 0.3852 4.96e-41 2pz0:A
4 5t9c:E 263 233 0.2661 0.2510 0.2833 5.43e-24 5t91:A, 5t9b:G
5 4r7o:C 280 163 0.2137 0.1893 0.3252 4.09e-23 4r7o:A, 4r7o:B, 4r7o:D, 4r7o:E, 4r7o:F, 4r7o:G
6 2oog:D 268 235 0.2782 0.2575 0.2936 4.33e-22 2oog:A, 2oog:B, 2oog:C, 2oog:E, 2oog:F
7 8ghh:A 276 156 0.2177 0.1957 0.3462 2.25e-19 8ghi:A
8 7ym0:A 301 143 0.1895 0.1561 0.3287 1.31e-15 7ym0:B, 7ymr:A, 7ymr:B, 7ymr:C, 7ymr:D
9 3qvq:A 251 145 0.2016 0.1992 0.3448 1.65e-15 3qvq:B, 3qvq:C, 3qvq:D
10 3no3:A 238 230 0.2702 0.2815 0.2913 2.62e-14
11 7ww4:A 480 225 0.2379 0.1229 0.2622 1.40e-10 7wwc:A
12 3ks6:A 250 87 0.1250 0.1240 0.3563 1.21e-09 3ks5:A, 3ks5:B, 3ks6:B, 3ks6:C, 3ks6:D
13 5vug:A 268 119 0.1290 0.1194 0.2689 1.99e-08
14 1t8q:B 329 105 0.1411 0.1064 0.3333 5.15e-08 1t8q:A, 1t8q:C, 1t8q:D, 1ydy:A, 1ydy:B
15 3l12:A 297 99 0.1331 0.1111 0.3333 7.05e-07 3l12:B
16 8cwp:A 327 52 0.0927 0.0703 0.4423 3.07e-06
17 6pmp:C 617 100 0.0927 0.0373 0.2300 0.91 6pmp:A, 6pmp:B, 6pmp:D
18 6pbc:A 1070 38 0.0565 0.0131 0.3684 1.1
19 7z3j:A 1119 38 0.0565 0.0125 0.3684 1.2 2fci:A, 4k45:A, 7nxe:A, 2pld:A, 2ple:A, 5tq1:A, 5tqs:A, 5tqs:B, 5tqs:D, 5tqs:C, 1ywo:A
20 7t8t:A 1086 38 0.0565 0.0129 0.3684 1.3
21 3fzg:A 196 72 0.0645 0.0816 0.2222 1.3
22 1kae:A 434 36 0.0605 0.0346 0.4167 3.1 1kae:B, 1kah:A, 1kah:B, 1kar:A, 1kar:B
23 3ijd:A 286 51 0.0645 0.0559 0.3137 4.4 3ijd:B
24 7rei:A 243 85 0.0968 0.0988 0.2824 4.7 8u9j:A, 8u9j:B, 8uan:A
25 8t7c:A 1001 45 0.0645 0.0160 0.3556 5.4
26 3qr0:A 781 50 0.0524 0.0166 0.2600 5.9 3qr1:A, 3qr1:D
27 1nw8:A 272 44 0.0565 0.0515 0.3182 6.9 1eg2:A, 1nw5:A, 1nw6:A, 1nw7:A
28 6wn6:B 264 23 0.0484 0.0455 0.5217 7.1 6wn6:A, 6wn6:C, 6wn6:D
29 1b1y:A 500 16 0.0444 0.0220 0.6875 9.8 6f9h:A, 6f9j:A, 6f9l:A, 2xff:A, 2xfy:A, 2xg9:A, 2xgb:A, 2xgi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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