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BioLiP
>protein
MWDAQFENLLRRYLPFLSADQPLEQDINLRDIGLDSLGTVELLSELENTYDVHFQDEALTKETFETPGVLWKTLSQMVE

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7f2r:B 79 79 1.0000 1.0000 1.0000 5.61e-54
2 8cg6:C 75 44 0.2025 0.2133 0.3636 0.005
3 4bph:A 85 44 0.2025 0.1882 0.3636 0.010
4 2x2b:A 76 43 0.2405 0.2500 0.4419 0.020
5 2lki:A 83 37 0.1772 0.1687 0.3784 0.022
6 4h2y:D 63 34 0.1392 0.1746 0.3235 0.030
7 4h2w:D 75 73 0.1899 0.2000 0.2055 0.038 4h2x:D
8 2fac:A 77 33 0.1899 0.1948 0.4545 0.075 2fac:B, 2fad:A, 2fad:B, 2fae:A, 4keh:C, 4keh:D, 1l0i:A, 6n3p:I, 6n3p:L, 6n3p:J, 3ny7:B, 7nyw:G, 7nyx:G, 7nyy:G, 7nyz:G, 7nz0:G, 7nz2:G1, 7nz2:G2, 7nz2:G3, 7nz2:G4, 7nz3:G1, 7nz3:G2, 7nz4:G1, 7nz4:G2, 1t8k:A, 5usr:K, 5vcb:f, 5vcb:e, 5vcb:d, 5vcb:F, 5vcb:D, 5vcb:X, 6w1d:C, 6w98:B
9 8iuf:AB 88 51 0.1899 0.1705 0.2941 0.098 8j9h:AB, 8j9i:AB, 8j9j:AB
10 7arc:U 84 32 0.1899 0.1786 0.4688 0.11 7ard:U
11 8jfh:E 79 33 0.1646 0.1646 0.3939 0.16 8jfn:B
12 2k0x:A 86 42 0.1899 0.1744 0.3571 0.29 2kg6:A, 2kg8:A, 2kg9:A, 2kga:A, 2kgc:A, 2kgd:A, 2kge:A, 2mvu:A, 2mvv:A
13 3gzl:A 81 28 0.1519 0.1481 0.4286 0.73 2fq0:A, 2fq2:A, 3gzm:B
14 8iuf:AC 92 46 0.1772 0.1522 0.3043 0.99 8j9h:AC, 8j9i:AC, 8j9j:AC
15 2qnw:A 80 33 0.1519 0.1500 0.3636 1.5
16 7ar7:T 84 31 0.1519 0.1429 0.3871 1.7 7ar8:T, 8bq6:T
17 7zmb:Q 85 28 0.1392 0.1294 0.3929 2.0 7zm7:O, 7zmb:O, 7zme:Q, 7zmg:O, 7zmg:Q
18 2eht:A 77 50 0.2025 0.2078 0.3200 2.2
19 2fva:A 82 50 0.1772 0.1707 0.2800 2.3
20 5vc7:A 544 20 0.1266 0.0184 0.5000 2.9 5vc7:C, 5vc7:D, 5vc7:E, 5vc7:F, 5vc7:G
21 7ak6:U 88 28 0.1266 0.1136 0.3571 3.4 7a5h:w, 7ak6:T, 8c2s:T, 8c2s:U, 8ca3:T, 8ca5:T, 8ca5:U, 6g2j:U, 6g72:U, 5gup:O, 5gup:X, 5lnk:j, 5lnk:X, 6odd:A, 7oi6:w, 7oi8:w, 7oie:w, 8olt:T, 8om1:U, 5ool:w, 5oom:w, 8pw7:T1, 8q0a:T, 8q0a:U, 8q0f:U, 8q0o:U, 8q1p:T, 8q1u:T, 8q1y:U, 8q25:T, 8q45:T, 8q46:T, 8q46:U, 8q47:T, 8q47:U, 8q49:U, 6q9b:AB, 6q9d:AA, 6qa9:AA, 6qa9:AB, 6qbx:AA, 6qbx:AB, 6qc5:AA, 6qc6:AA, 6qc7:AA, 6qc8:AB, 7qsd:T, 7qsl:T, 7qsn:T, 8qu5:w, 7r41:T, 7r43:T, 7r44:T, 7r45:T, 7r46:T, 7r47:T, 7r47:U, 7r48:T, 7r4c:T, 7r4d:T, 7r4f:U, 7r4g:T, 8rgt:T, 8ud1:1U, 8ueo:1T, 8ueo:1U, 8uep:1U, 8ueq:1T, 8ueq:1U, 8uer:1T, 8uer:1U, 8ues:1T, 8ues:1U, 8uet:1T, 8ueu:1T, 8ueu:1U, 8uev:1T, 8uew:1T, 8uew:1U, 8uex:1T, 8uex:1U, 8uey:1T, 8uey:1U, 8uez:1T, 8uez:1U, 8ugh:1U, 8ugi:1U, 8ugj:1U, 8ugn:1T, 8ugn:1U, 8ugn:5U, 8ugr:1U, 8ugr:5T, 8ugr:5U, 7v2d:X, 7v2f:X, 7v2k:X, 7v30:X, 7v32:X, 7v33:G, 7v3m:X, 7vbl:X, 7vbp:X, 7vwj:G, 7vwl:X, 7vy1:X, 7vye:X, 7vyi:X, 7vzv:X, 7w00:X, 7w0h:X, 7w1o:X, 7w1p:X, 7w20:X, 7w2k:X, 7w2l:X, 7w31:G, 7w32:X, 7w35:X, 7w4c:X, 7w4g:X, 7w4j:X, 7w4k:X, 7w4l:X, 7w4n:X, 7zdh:X, 7zdm:j, 7zdm:X, 7zdp:X, 7zdp:j, 6zka:X, 6zkb:X, 6zkc:X, 6zkd:j, 6zke:X, 6zkf:X, 6zkg:X, 6zkh:X, 6zkh:j, 6zki:X, 6zkj:X, 6zkk:X, 6zkl:X, 6zkm:X, 6zkm:j, 6zkn:X, 6zkn:j, 6zko:X, 6zkp:X, 6zkp:j, 6zkr:X, 6zks:X, 6zkt:X, 6zku:X, 6zr2:T, 6zr2:U, 6ztq:U
22 2wk8:B 364 41 0.2025 0.0440 0.3902 4.6
23 6tvo:A 1011 30 0.1519 0.0119 0.4000 5.2 2l1l:B
24 3hqt:B 386 41 0.2025 0.0415 0.3902 5.6 3hqt:A, 3kki:A, 3kki:B, 2wk8:A, 2wk9:A, 2wk9:B, 2wka:A, 2wka:B
25 4nk5:A 258 39 0.1899 0.0581 0.3846 6.4 4nk5:C, 4nk5:D, 4nk5:E
26 8egr:H 313 46 0.1899 0.0479 0.3261 6.9 8egr:G
27 6sga:FW 247 41 0.1772 0.0567 0.3415 7.6 7pua:FW, 6sgb:FW
28 5kp8:B 78 46 0.1519 0.1538 0.2609 8.3
29 3all:B 371 44 0.1646 0.0350 0.2955 9.3 3alj:A, 3all:A, 3alm:A, 3alm:B, 4gf7:A, 3gmb:A, 3gmb:B, 3gmc:A, 3gmc:B, 4h2n:A, 4h2p:A, 4h2p:B, 4h2p:C, 4h2p:D, 4h2q:A, 4h2r:A, 4h2r:B, 5hxi:A, 4jy2:A, 4jy2:B, 4jy3:A, 4jy3:B
30 8bee:U 87 31 0.1519 0.1379 0.3871 9.4 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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