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BioLiP
>protein
MVVLKCPVCNGDVNVPDDALPGEIVEHECGAQLEVYNDHGRLALRLAEQVGEDWGE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vpb:E 56 56 1.0000 1.0000 1.0000 3.60e-36 3vpb:F
2 5k2m:F 53 55 0.3929 0.4151 0.4000 0.011 5k2m:E
3 5ein:C 54 55 0.3571 0.3704 0.3636 0.013 5eio:C, 3wwl:A, 3wwn:B
4 5t4o:F 466 40 0.2679 0.0322 0.3750 1.9 8dbp:D, 8dbp:E, 8dbp:F, 8dbq:D, 8dbq:E, 8dbq:F, 8dbr:D, 8dbr:E, 8dbr:F, 8dbs:D, 8dbs:E, 8dbs:F, 8dbt:D, 8dbt:E, 8dbt:F, 8dbu:D, 8dbu:E, 8dbu:F, 8dbv:E, 8dbv:D, 8dbv:F, 8dbw:E, 8dbw:D, 8dbw:F, 3oaa:D, 3oaa:M, 3oaa:L, 3oaa:T, 3oaa:b, 6oqr:E, 6oqr:F, 6oqr:D, 6oqs:E, 6oqs:F, 6oqs:D, 6oqt:E, 6oqt:F, 6oqt:D, 6oqu:E, 6oqu:F, 6oqu:D, 6oqv:F, 6oqv:E, 6oqv:D, 6oqw:E, 6oqw:F, 6oqw:D, 6pqv:E, 6pqv:F, 6pqv:D, 5t4p:E, 5t4q:D, 6wnq:E, 6wnq:F, 6wnq:D, 6wnr:E, 6wnr:F, 6wnr:D
5 3vsl:A 631 17 0.1429 0.0127 0.4706 2.3 3vsl:B
6 8pi1:B 276 46 0.3214 0.0652 0.3913 2.5 3hea:A, 3hea:B, 3hea:C, 3hea:D, 3hea:E, 3hea:F, 3hi4:A, 3hi4:B, 3hi4:C, 3hi4:D, 3hi4:E, 3hi4:F, 3ia2:A, 3ia2:B, 3ia2:C, 3ia2:D, 3ia2:E, 3ia2:F, 8pi1:A, 8pi1:C, 8pi1:D, 8pi1:E, 8pi1:F, 8pi1:G, 8pi1:H, 8pi1:I, 8pi1:J, 8pi1:K, 8pi1:M, 8pi1:N, 8pi1:O
7 6wvv:K 440 40 0.2857 0.0364 0.4000 5.0
8 6wvv:F 497 40 0.2857 0.0322 0.4000 5.1 6wvv:G, 6wvv:H, 6wvv:I, 6wvv:J, 6wvv:L
9 8ez4:C 525 40 0.2857 0.0305 0.4000 5.1 5cbm:A, 5cbm:B, 5cbm:C, 5cbm:D, 5cbm:E, 5cbm:F, 5cbm:G, 5cbm:H, 5cbm:I, 5cbm:J, 5cbm:K, 5cbm:L, 6ee2:A, 6ee2:B, 6ee2:C, 6ee2:D, 6ee2:E, 6ee2:F, 6ee2:G, 6ee2:H, 6ee2:I, 6ee2:J, 6ee2:K, 6ee2:L, 6eee:A, 6eee:B, 6eee:C, 6eee:D, 6eee:E, 6eee:F, 6eee:G, 6eee:H, 6eee:I, 6eee:J, 6eee:K, 6eee:L, 8ez4:A, 8ez4:B, 8ez4:D, 8ez4:E, 8ez4:F, 8ez4:G, 8ez4:H, 8ez4:I, 8ez4:J, 8ez4:K, 8ez4:L, 4k3n:A, 4k3n:B, 4k3n:C, 4k3n:D, 4k3n:E, 4k3n:F, 4k3n:G, 4k3n:H, 4k3n:I, 4k3n:J, 4k3n:K, 4k3n:L, 3kqx:A, 3kqx:B, 3kqx:C, 3kqx:D, 3kqx:E, 3kqx:F, 3kqx:G, 3kqx:H, 3kqx:I, 3kqx:J, 3kqx:K, 3kqx:L, 3kqz:A, 3kqz:B, 3kqz:C, 3kqz:D, 3kqz:E, 3kqz:F, 3kqz:G, 3kqz:H, 3kqz:I, 3kqz:J, 3kqz:K, 3kqz:L, 3kr4:A, 3kr4:B, 3kr4:C, 3kr4:D, 3kr4:E, 3kr4:F, 3kr4:G, 3kr4:H, 3kr4:I, 3kr4:J, 3kr4:K, 3kr4:L, 3kr5:A, 3kr5:B, 3kr5:C, 3kr5:D, 3kr5:E, 3kr5:F, 3kr5:G, 3kr5:H, 3kr5:I, 3kr5:J, 3kr5:K, 3kr5:L, 4r6t:A, 4r6t:B, 4r6t:C, 4r6t:D, 4r6t:E, 4r6t:F, 4r6t:G, 4r6t:H, 4r6t:I, 4r6t:J, 4r6t:K, 4r6t:L, 4r76:A, 4r76:B, 4r76:C, 4r76:D, 4r76:E, 4r76:F, 4r76:G, 4r76:H, 4r76:I, 4r76:J, 4r76:K, 4r76:L, 4r7m:A, 4r7m:B, 4r7m:C, 4r7m:D, 4r7m:E, 4r7m:F, 4r7m:G, 4r7m:H, 4r7m:I, 4r7m:J, 4r7m:K, 4r7m:L, 7rie:A, 7rie:B, 7rie:C, 7rie:D, 7rie:E, 7rie:F, 7rie:G, 7rie:H, 7rie:I, 7rie:J, 7rie:K, 7rie:L, 7srv:A, 7srv:B, 7srv:C, 7srv:D, 7srv:E, 7srv:F, 8svm:A, 8svm:B, 8svm:C, 8svm:D, 8svm:E, 8svm:F, 8svm:G, 8svm:H, 8svm:I, 8svm:J, 8svm:K, 8svm:L, 8sw9:A, 8sw9:B, 8sw9:C, 8sw9:D, 8sw9:E, 8sw9:F, 8sw9:G, 8sw9:H, 8sw9:I, 8sw9:J, 8sw9:K, 8sw9:L, 7t3v:A, 7t3v:B, 7t3v:C, 7t3v:D, 7t3v:E, 7t3v:F, 3t8w:A, 3t8w:B, 3t8w:E, 3t8w:C, 3t8w:D, 3t8w:F, 3t8w:G, 3t8w:H, 3t8w:K, 3t8w:I, 3t8w:J, 3t8w:L, 4x2t:A, 4x2t:B, 4x2t:C, 4x2t:D, 4x2t:E, 4x2t:F, 4x2t:G, 4x2t:H, 4x2t:I, 4x2t:J, 4x2t:K, 4x2t:L, 4zx8:A, 4zx8:B, 4zx8:C, 4zx8:D, 4zx8:E, 4zx8:F, 4zx8:G, 4zx8:H, 4zx8:I, 4zx8:J, 4zx8:K, 4zx8:L, 4zx9:A, 4zx9:B, 4zx9:C, 4zx9:D, 4zx9:E, 4zx9:F, 4zx9:G, 4zx9:H, 4zx9:I, 4zx9:J, 4zx9:K, 4zx9:L, 4zy0:A, 4zy0:B, 4zy0:C, 4zy0:D, 4zy0:E, 4zy0:F, 4zy0:G, 4zy0:H, 4zy0:I, 4zy0:J, 4zy0:K, 4zy0:L, 4zy1:A, 4zy1:B, 4zy1:C, 4zy1:D, 4zy1:E, 4zy1:F, 4zy1:G, 4zy1:H, 4zy1:I, 4zy1:J, 4zy1:K, 4zy1:L, 4zy2:A, 4zy2:B, 4zy2:C, 4zy2:D, 4zy2:E, 4zy2:F, 4zy2:G, 4zy2:H, 4zy2:I, 4zy2:J, 4zy2:K, 4zy2:L, 4zyq:A, 4zyq:B, 4zyq:C, 4zyq:D, 4zyq:E, 4zyq:F, 4zyq:G, 4zyq:H, 4zyq:I, 4zyq:J, 4zyq:K, 4zyq:L
10 7k5k:A 545 40 0.2857 0.0294 0.4000 5.1 7k5k:B, 7k5k:C, 7k5k:D, 7k5k:E, 7k5k:F, 6wvv:A, 6wvv:B, 6wvv:C, 6wvv:D, 6wvv:E
11 4cg4:C 376 38 0.2500 0.0372 0.3684 5.4 4cg4:D, 4cg4:E, 4cg4:F
12 6kun:A 294 34 0.2500 0.0476 0.4118 5.8 6kun:B
13 8dfv:A 1664 16 0.1607 0.0054 0.5625 7.0
14 7ubn:Q 207 29 0.1964 0.0531 0.3793 7.4 4mo1:A, 4mo1:B, 7ubj:A, 7ubj:B, 7ubk:A, 7ubk:B, 7ubl:A, 7ubm:Q
15 8dga:A 1629 16 0.1607 0.0055 0.5625 7.5
16 4yi7:A 331 27 0.2143 0.0363 0.4444 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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