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BioLiP
>protein
MVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIF
TVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFGYKPVPDEEPNSTDVEETLERIKNNDPKLEEVNLN
NIRNIPIPTLKAYAEALKENSYVKKFSIVGTRSNDPVAYALAEMLKENKVLKTLNVESNFISGAGILRLVEALPYNTSLV
EMKIDNQSQPLGNKVEMEIVSMLEKNATLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRLADLTG

The query sequence (length=306) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pki:G 306 306 1.0000 1.0000 1.0000 0.0
2 4z94:G 307 303 0.7778 0.7752 0.7855 1.20e-178 4pkh:G, 1t44:G
3 1io0:A 166 166 0.4641 0.8554 0.8554 1.12e-99
4 4pkg:G 168 126 0.4118 0.7500 1.0000 3.98e-91 4pkh:B
5 2fgh:A 721 131 0.4052 0.1720 0.9466 8.78e-82 3a5l:S, 3a5m:S, 3a5n:S, 3a5o:S, 1c0f:S, 1c0g:S, 4cbu:G, 4cbw:G, 4cbx:G, 3ci5:G, 3cip:G, 3cjb:G, 3cjc:G, 1d4x:G, 1dej:S, 1eqy:S, 1esv:S, 2ff3:A, 2ff6:G, 3ffk:A, 3ffk:D, 2fgh:B, 2fh1:A, 2fh1:B, 2fh1:C, 2fh2:A, 2fh2:B, 2fh2:C, 2fh3:A, 2fh3:B, 2fh3:C, 1h1v:G, 6i4d:G, 6i4e:G, 6i4f:G, 6i4g:G, 6i4g:H, 6i4h:G, 6i4i:G, 6i4j:G, 6i4k:G, 6i4l:G, 6i4m:G, 6lje:A, 6lje:B, 6ljf:A, 6ljf:B, 1mdu:A, 1mdu:D, 5mvv:G, 1nlv:G, 1nm1:G, 1nmd:G, 1nph:A, 1p8x:A, 1p8x:B, 1p8x:C, 1p8z:G, 4pkh:E, 4pkh:J, 1rgi:G, 3tu5:B, 5ubo:S, 1yag:G, 1yvn:G, 5zz0:G, 5zz0:A
6 2fgh:A 721 105 0.1569 0.0666 0.4571 4.95e-17 3a5l:S, 3a5m:S, 3a5n:S, 3a5o:S, 1c0f:S, 1c0g:S, 4cbu:G, 4cbw:G, 4cbx:G, 3ci5:G, 3cip:G, 3cjb:G, 3cjc:G, 1d4x:G, 1dej:S, 1eqy:S, 1esv:S, 2ff3:A, 2ff6:G, 3ffk:A, 3ffk:D, 2fgh:B, 2fh1:A, 2fh1:B, 2fh1:C, 2fh2:A, 2fh2:B, 2fh2:C, 2fh3:A, 2fh3:B, 2fh3:C, 1h1v:G, 6i4d:G, 6i4e:G, 6i4f:G, 6i4g:G, 6i4g:H, 6i4h:G, 6i4i:G, 6i4j:G, 6i4k:G, 6i4l:G, 6i4m:G, 6lje:A, 6lje:B, 6ljf:A, 6ljf:B, 1mdu:A, 1mdu:D, 5mvv:G, 1nlv:G, 1nm1:G, 1nmd:G, 1nph:A, 1p8x:A, 1p8x:B, 1p8x:C, 1p8z:G, 4pkh:E, 4pkh:J, 1rgi:G, 3tu5:B, 5ubo:S, 1yag:G, 1yvn:G, 5zz0:G, 5zz0:A
7 8gsu:B 154 118 0.1993 0.3961 0.5169 1.43e-36 8gsw:B, 8gt1:B, 8gt2:B, 8gt3:B, 8gt4:B, 8gt5:B, 7w4z:B, 7w50:B, 7w51:B, 7w52:B, 7w52:D, 7w52:F, 7w52:H, 7yne:B, 7yne:D, 7yne:F, 7yne:H
8 3fg6:H 306 95 0.1275 0.1275 0.4105 7.32e-13 3fg6:A, 3fg6:C, 3fg6:G, 3fg6:E, 3fg6:F, 3fg6:D, 3fg6:B
9 5irm:C 770 76 0.0980 0.0390 0.3947 6.97e-08 5irl:A, 5irm:A, 5irn:A
10 5irm:C 770 100 0.0980 0.0390 0.3000 0.001 5irl:A, 5irm:A, 5irn:A
11 5irm:C 770 102 0.0980 0.0390 0.2941 0.009 5irl:A, 5irm:A, 5irn:A
12 5irm:C 770 72 0.0784 0.0312 0.3333 1.3 5irl:A, 5irm:A, 5irn:A
13 7whg:G 221 70 0.0719 0.0995 0.3143 0.025
14 7sbw:B 1196 108 0.0915 0.0234 0.2593 0.44 6nzk:A, 6nzk:B, 6nzk:C, 7sb3:J, 7sb3:A, 7sb3:B, 7sb4:A, 7sb4:C, 7sb4:B, 7sbv:J, 7sbv:A, 7sbv:B, 7sbw:J, 7sbw:A, 7sbx:J, 7sbx:B, 7sbx:A, 7sby:J, 7sby:A, 7sby:B
15 3vth:A 753 169 0.1340 0.0544 0.2426 0.86 3vth:B, 3vti:A, 3vti:B
16 4rny:A 359 44 0.0523 0.0446 0.3636 2.2 4rny:B, 4rnz:A
17 4k17:B 660 102 0.1013 0.0470 0.3039 2.4 4k17:C
18 4r6g:A 464 117 0.1078 0.0711 0.2821 4.0
19 2bex:B 457 44 0.0523 0.0350 0.3636 4.2
20 7whf:G 226 73 0.0686 0.0929 0.2877 5.1 7whf:C
21 7nqr:A 386 75 0.0588 0.0466 0.2400 9.0 7nqr:B, 7nqs:A, 7nqs:B, 7nqu:A, 7nqu:B, 7nqz:A, 7nqz:B, 7ooe:A, 7ooe:B, 7oog:A, 7oog:B, 7ooh:A, 7ooh:B, 7p31:A, 7p31:B, 6rzq:A, 6rzq:B, 6s02:A, 6s02:B
22 6trh:C 385 30 0.0425 0.0338 0.4333 9.4 6srd:A, 6srd:B, 6sud:A, 6sud:B, 6to0:A, 6to0:B, 6tow:A, 6tow:B, 6trh:A, 6trh:B, 6trh:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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