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BioLiP
>protein
MVTAFILMVTAAGKEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTMIAI

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2e1a:A 75 75 1.0000 1.0000 1.0000 1.30e-48 2e1a:B, 2e1a:C, 2e1a:D, 2z4p:B, 2z4p:C, 2z4p:A, 2z4p:D
2 2zbc:A 81 73 0.4800 0.4444 0.4932 2.70e-20 2zbc:D, 2zbc:C, 2zbc:B, 2zbc:E, 2zbc:F, 2zbc:H, 2zbc:G
3 2cyy:A 151 72 0.3733 0.1854 0.3889 1.45e-10 2e1c:A, 2zny:A, 2zny:C, 2zny:E, 2zny:B, 2zny:D, 2zny:F, 2zny:H, 2zny:G, 2znz:A, 2znz:B, 2znz:C, 2znz:D, 2znz:E, 2znz:F, 2znz:G, 2znz:H
4 2djw:B 80 74 0.3067 0.2875 0.3108 3.85e-09 2djw:E, 2djw:G, 2djw:J
5 7fby:A 153 72 0.3333 0.1634 0.3472 7.64e-07
6 2cg4:A 149 75 0.3200 0.1611 0.3200 4.13e-06 2cg4:B
7 2e7w:A 150 59 0.2400 0.1200 0.3051 0.002 2e7x:A, 2efp:A, 2efq:A, 2pmh:A, 2pn6:A, 2yx4:A, 2yx7:A
8 6n7r:I 147 68 0.2533 0.1293 0.2794 0.23
9 1lw7:A 344 29 0.1600 0.0349 0.4138 0.62
10 6ck7:A 172 48 0.2267 0.0988 0.3542 0.63 6ck7:B, 6ck7:C, 6ck7:D
11 8caw:A 491 35 0.1333 0.0204 0.2857 3.4 8cay:A, 8cb9:A, 8cdo:A
12 2yw2:A 423 31 0.1600 0.0284 0.3871 4.6 2yw2:B
13 8cko:A 492 53 0.1600 0.0244 0.2264 6.3 8ckd:A, 8cke:A, 6i7w:A, 4ra1:A, 4ze9:A, 4zeb:A, 4zeb:B, 4zec:A, 4zed:A, 4zei:A, 4zek:A
14 7eg0:B 567 22 0.1467 0.0194 0.5000 7.0 7eg0:D, 7eg1:B, 7eg1:D, 7eg4:D, 7eg4:B
15 3viu:A 703 34 0.1733 0.0185 0.3824 8.0
16 1rp0:A 278 26 0.2000 0.0540 0.5769 8.5 1rp0:B
17 2anr:A 155 19 0.1200 0.0581 0.4737 9.4 2ann:A
18 7lrd:A 512 22 0.1467 0.0215 0.5000 9.7 7lrd:C, 7lre:A, 7lre:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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