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BioLiP
>protein
MVSVKPLPDIDSNEGETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRKK

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2rsn:A 75 75 1.0000 1.0000 1.0000 3.36e-50 3g7l:A
2 6v41:AAA 61 53 0.3200 0.3934 0.4528 6.61e-13
3 7n27:A 57 54 0.3333 0.4386 0.4630 3.01e-12 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
4 6v2d:G 64 51 0.3067 0.3594 0.4510 9.11e-10 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
5 6asz:A 53 39 0.2933 0.4151 0.5641 1.20e-07 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
6 3qo2:A 61 54 0.3067 0.3770 0.4259 8.93e-07 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
7 3tzd:A 58 39 0.2800 0.3621 0.5385 9.13e-07 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
8 2rvn:A 83 56 0.3333 0.3012 0.4464 1.64e-06
9 5epk:A 54 53 0.2667 0.3704 0.3774 3.89e-06 3h91:A, 3h91:B
10 8uxq:A 170 54 0.3333 0.1471 0.4630 4.67e-06 3fdt:A
11 1pfb:A 55 41 0.2667 0.3636 0.4878 4.73e-06 1pdq:A
12 5eq0:A 55 43 0.2400 0.3273 0.4186 2.70e-05 3i91:A
13 5epl:B 58 42 0.2400 0.3103 0.4286 4.38e-05 5epl:A
14 3gv6:A 56 41 0.2267 0.3036 0.4146 5.23e-05 3i90:A, 3i90:B
15 7vyw:A 47 42 0.2533 0.4043 0.4524 6.30e-05
16 1guw:A 73 31 0.2267 0.2329 0.5484 7.07e-05 6d07:A, 6d07:B, 6d08:A, 6d08:B
17 5ejw:A 80 48 0.2400 0.2250 0.3750 1.65e-04 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
18 4u68:A 64 46 0.2400 0.2812 0.3913 2.84e-04 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
19 7vrf:A 61 39 0.2267 0.2787 0.4359 0.017 7vrf:B
20 5e4w:C 105 37 0.2000 0.1429 0.4054 0.17 5e4w:D, 5e4x:A
21 3lnb:A 252 37 0.1600 0.0476 0.3243 0.73
22 2b2w:A 177 22 0.1467 0.0621 0.5000 0.84 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
23 3edo:A 151 29 0.1467 0.0728 0.3793 1.4 3edo:B
24 4fsx:A 680 59 0.2400 0.0265 0.3051 1.8 4fsx:B, 4ft2:B, 4ft2:A
25 5dll:A 854 37 0.1733 0.0152 0.3514 1.9
26 7ubu:A 708 59 0.2400 0.0254 0.3051 2.8 4ft4:A, 4ft4:B
27 1g5c:A 169 56 0.2000 0.0888 0.2679 5.1 1g5c:B, 1g5c:C, 1g5c:D, 1g5c:E, 1g5c:F
28 3l0a:A 266 65 0.2933 0.0827 0.3385 5.2
29 4fai:B 305 22 0.1067 0.0262 0.3636 5.5 4fai:A, 4fbe:A, 4fbe:B
30 6ryr:W 708 34 0.1600 0.0169 0.3529 6.3 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
31 6bt9:B 626 24 0.1467 0.0176 0.4583 6.4 6bt9:A
32 3vay:A 230 29 0.1333 0.0435 0.3448 6.5 3vay:B
33 6guu:B 204 37 0.1467 0.0539 0.2973 8.1 6guu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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