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BioLiP
>protein
MVSAAEVVSAQENQTYTYVRCWYRTSHSKDDAATDWKWAKNQDGSDFTIDGYWWSSVSFKNMFYTNTSQNVIRQRCEETL
DLANENADITFFAADNRYSYNHTIWSNDAAMQPDQINKVVALGDSLSDTGNIFNASQWRFPNPNSWFLGHFSNGFVWTEY
VAKAKNLPLYNWAVGGAAGENQYIALTGVGEQVSSYLTYTKLAKNYNPANTLFTLEFGLNDFMNYNRSVPEVKADYAEAL
IRLTDAGAKNFMLMTLPDATKAPQFKYSTQEEIETIRAKVLKMNEFIKAQAMYYKAQGYNIALFDTHALFEKLTSAPEEH
GFVNASDPCLDINRSSSVDYMYTHSLRSECAASGADKFVFWDVTHPTTATHRYVAEKMLESSNNLEEFRF

The query sequence (length=390) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8h0d:A 390 390 1.0000 1.0000 1.0000 0.0 8h09:A, 8h09:B, 8h0a:B, 8h0b:B, 8h0c:A, 8h0c:B, 8h0d:B
2 6jl2:A 401 389 0.7308 0.7107 0.7326 0.0 6jkz:A, 6jl2:B, 6jl2:C
3 8a25:A 289 282 0.2128 0.2872 0.2943 7.27e-28 8a26:A
4 8d8x:A 287 294 0.1923 0.2613 0.2551 1.92e-12 8d8y:A, 8d8y:B, 8d8z:A, 8d8z:B, 6uqw:A, 6uqw:B, 6uqx:A, 6uqx:B, 6uqy:A, 6uqy:B, 6uqz:A, 6uqz:B, 6ur0:A, 6ur0:B, 6ur1:A, 6ur1:B
5 8hwp:A 328 331 0.2231 0.2652 0.2628 1.29e-10 5xtu:A
6 4gby:A 475 88 0.0615 0.0505 0.2727 0.20 4gbz:A, 4gc0:A
7 3kvn:X 628 224 0.1333 0.0828 0.2321 1.2 3kvn:A
8 6bd0:A 300 69 0.0538 0.0700 0.3043 1.5 6bda:A, 6bdb:A, 3qqy:A, 6uvw:A, 6uvw:D, 6uwg:A, 6uwh:A, 6uwj:A
9 3tvq:A 152 39 0.0410 0.1053 0.4103 3.9
10 7exz:A 324 42 0.0410 0.0494 0.3810 5.3 7bvr:A, 7bvr:C, 7bvr:E, 7bvr:G, 7exz:C, 7exz:E, 7exz:G, 7xrf:A, 7xrf:C, 7xrf:E, 7xrf:G
11 8kg9:M 812 57 0.0410 0.0197 0.2807 8.8
12 8k2h:B 563 94 0.0538 0.0373 0.2234 8.8 8k2h:A, 8k2i:B, 8k2i:A
13 7qhs:G 756 57 0.0410 0.0212 0.2807 8.9 7z13:N, 7z13:Q
14 7pmk:Q 766 57 0.0410 0.0209 0.2807 8.9 7pmn:Q
15 3j6b:6 209 42 0.0333 0.0622 0.3095 9.2
16 8p5e:G 825 57 0.0410 0.0194 0.2807 9.9 8kg6:M, 8kg8:M, 8p62:G, 8p63:G
17 8xgc:8 857 57 0.0410 0.0187 0.2807 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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