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BioLiP
>protein
MVQAWYMDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKMRNYSWMDIITICKDTLPNYEEK
IKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEPVWTPYNR
PADHFDARVQYMSFLEGTA

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5i8s:A 179 179 1.0000 1.0000 1.0000 8.35e-135 5i8t:A, 5i8y:A, 5i91:A, 5i93:A
2 7jxg:A 178 178 0.8380 0.8427 0.8427 1.86e-113 4qgn:A
3 2hji:A 156 98 0.1620 0.1859 0.2959 1.86e-09
4 4zxa:W 324 75 0.1341 0.0741 0.3200 0.026 4zxa:X, 4zxa:Y, 4zxa:Z, 4zxc:W, 4zxc:Z
5 3bu7:B 358 89 0.1061 0.0531 0.2135 0.062 3bu7:A
6 2d40:A 289 47 0.0950 0.0588 0.3617 0.13 2d40:B, 2d40:C, 2d40:D
7 2eo5:A 412 66 0.1285 0.0558 0.3485 0.15
8 3nl1:A 366 47 0.0726 0.0355 0.2766 0.20 4fag:A, 4fah:A, 4fbf:A, 3njz:A, 3nkt:A, 3nst:A, 3nvc:A, 3nw4:A, 2phd:A, 2phd:B, 2phd:C, 2phd:D
9 3mpb:B 227 44 0.0726 0.0573 0.2955 1.1 3kmh:A, 3kmh:B, 3mpb:A
10 8uo4:A 292 98 0.1285 0.0788 0.2347 1.6 8uo2:A
11 8ibw:C 922 64 0.0894 0.0174 0.2500 1.9 8gh6:A, 8ibx:C, 8iby:C, 8ibz:C
12 1vrb:C 298 39 0.0615 0.0369 0.2821 2.1
13 7zcc:B 326 39 0.0615 0.0337 0.2821 2.3 1vrb:A, 1vrb:B, 1vrb:D, 7zcc:A, 7zcc:C, 7zcc:D
14 4tqm:A 402 55 0.0894 0.0398 0.2909 2.4
15 2vb6:A 724 35 0.0838 0.0207 0.4286 2.6
16 8c0v:B 1030 123 0.1732 0.0301 0.2520 3.2 8c0v:D, 8c0v:F, 8c0w:A, 8c0w:C, 8c0w:E, 8u0v:D, 8u0v:F, 8u0v:B
17 8flj:G 98 38 0.0838 0.1531 0.3947 5.6 8flj:E
18 4u06:A 344 58 0.1006 0.0523 0.3103 5.7
19 2gke:A 274 49 0.0838 0.0547 0.3061 6.2 2gkj:A
20 5vx5:A 161 69 0.1285 0.1429 0.3333 6.3 7khu:A, 7khu:B
21 4pxd:A 411 60 0.1006 0.0438 0.3000 6.5 4pxd:B, 1z2l:A, 1z2l:B
22 5utm:A 345 36 0.0615 0.0319 0.3056 9.6 5jy6:A, 5jy6:B, 5jy6:C, 5jy6:D, 5jya:A, 5jya:B, 5jya:C, 5jya:D, 5jye:A, 5jye:C, 4qx6:A, 4qx6:B, 4qx6:C, 4qx6:D, 5utl:A, 5utl:B, 5utl:C, 5utl:D, 5utm:B, 5utm:C, 5utm:D, 5v8x:A, 5v8x:B, 5v8x:C, 5v8x:D, 5y37:A, 5y37:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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