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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MVNTVNYFKQKLKTEQQIGMWVGLADGYCAEIAANVGYDWLLIDGEHAPNDVRSILAQLQSIAAYPSQAVVRPVSGDVPL
IKQLLDIGAQTLLIPMVESAEQAELMVKATRYPPEGIRGVGAALARASRWNNISDYLQTADEQICLLVQVESKKGLDNLD
EILNVDGVDGIFIGPADLSAALGYRGNPGHEFVQNIIVQTIQKIRAAGKAAGILSADEKLAKQYLELGTEFVAVGVDTSL
LMKSMKQLLSKFKN

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7et9:A 254 254 1.0000 1.0000 1.0000 0.0 7et9:B, 7et9:C, 7eta:A, 7eta:B, 7eta:C, 7etb:A, 7etb:B, 7etb:C, 7etc:A, 7etc:C, 7etc:B, 7etd:A, 7etd:B, 7etd:C, 7ete:A, 7ete:C, 7ete:B, 7etf:A, 7etf:B, 7etf:C, 7etg:A, 7etg:B, 7etg:C, 7eth:A, 7eth:B, 7eth:C, 7eti:A, 7eti:B, 7eti:C
2 2vwt:A 256 250 0.5984 0.5938 0.6080 7.89e-107 2vwt:B, 2vwt:C
3 2v5k:A 260 235 0.5866 0.5731 0.6340 1.38e-106 4b5s:A, 4b5s:B, 4b5t:A, 4b5t:B, 4b5u:A, 4b5u:B, 4b5v:A, 4b5v:B, 4b5w:A, 4b5w:B, 4b5w:C, 4b5w:D, 4b5w:E, 4b5w:F, 2v5k:B
4 1dxe:A 253 249 0.4449 0.4466 0.4538 3.20e-74 1dxe:B, 1dxf:A, 1dxf:B
5 8adq:A 252 237 0.3071 0.3095 0.3291 1.65e-33 7nnk:A, 7nnk:B, 7nr1:A, 7nuj:A, 7nuj:B, 7o5r:A, 7o5r:B, 7o5v:AAA, 7o5v:BBB, 7o5w:AAA, 7o5w:BBB, 7o87:AAA, 7o87:BBB, 7o9r:AAA, 7o9r:BBB, 7obu:A, 7obu:B, 6r62:A
6 4tv5:A 245 247 0.2441 0.2531 0.2510 6.26e-20 4tv6:A
7 1izc:A 299 237 0.2480 0.2107 0.2658 4.43e-13
8 8iau:H 412 111 0.1378 0.0850 0.3153 4.74e-04
9 8iav:C 460 111 0.1378 0.0761 0.3153 5.56e-04 8iav:D
10 8iav:A 451 111 0.1378 0.0776 0.3153 6.37e-04 8iav:B
11 8iat:A 501 111 0.1378 0.0699 0.3153 6.55e-04 8iat:B, 8iat:C, 8iat:D, 8iau:A, 8iau:B, 8iau:C, 8iau:D, 8iau:E, 8iau:F, 8iau:G, 8iaw:A, 8iaw:B, 8iax:A, 8iax:B, 8iax:C, 8iax:D, 8iax:E, 8iax:F, 8iax:G, 8iax:H, 8xw6:A, 8xw6:B, 8xw7:A, 8xw7:B, 8xw8:A, 8xw8:B, 8xw8:C, 8xw8:D, 8xw9:A, 8xw9:B, 8zly:A, 8zly:B, 8zly:C, 8zly:D, 8zly:E, 8zly:F, 8zly:G, 8zly:H
12 4yng:E 470 95 0.1063 0.0574 0.2842 0.085 8eq0:B, 8eq0:A, 4yng:A, 4yng:B, 4yng:C, 4yng:D, 4yng:F, 4yng:G, 4yng:H
13 1a3w:A 492 64 0.0787 0.0407 0.3125 0.15 1a3w:B, 1a3x:A, 1a3x:B
14 5clt:A 646 161 0.1496 0.0588 0.2360 0.37 5clt:B, 5clt:C, 5clw:A, 5clw:C, 5clw:B
15 3t07:A 583 53 0.0630 0.0274 0.3019 0.42 3t07:B, 3t07:C, 3t07:D, 3t0t:A, 3t0t:B, 3t0t:C, 3t0t:D
16 3c6y:A 256 35 0.0591 0.0586 0.4286 0.63 3c6z:A, 3c70:A, 2g4l:A, 1sc9:A, 1sck:A, 1scq:A, 1yas:A, 3yas:A, 4yas:A, 5yas:A, 1yb6:A, 1yb7:A
17 4l4x:A 503 92 0.1063 0.0537 0.2935 1.4
18 2h3h:A 313 80 0.0827 0.0671 0.2625 2.1 3c6q:C, 3c6q:D, 2h3h:B, 2qvc:A, 2qvc:B, 2qvc:C, 2qvc:D
19 8fnc:5 297 75 0.0709 0.0606 0.2400 2.3 8fn6:5, 8fnf:5, 8fni:5, 8fnk:5
20 4l80:C 347 53 0.0748 0.0548 0.3585 2.5 6kkh:C, 6kkh:F, 6kkh:I, 6kkh:L, 4l80:A, 4l80:B, 4l80:D, 4l80:F, 4l80:E
21 8z4r:A 465 138 0.1260 0.0688 0.2319 3.0 8z4q:A, 8z4s:A
22 3oul:A 222 55 0.0827 0.0946 0.3818 6.6 3oum:A, 3pkw:A, 3pkx:A
23 8xgc:8 857 38 0.0394 0.0117 0.2632 7.2
24 1sgj:A 231 59 0.0630 0.0693 0.2712 7.7 1sgj:B, 1sgj:C
25 7qhs:G 756 38 0.0394 0.0132 0.2632 8.1 7z13:N, 7z13:Q
26 4b79:A 236 36 0.0591 0.0636 0.4167 8.8 4b79:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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