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BioLiP
>protein
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDG
VVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5fw5:A 139 138 1.0000 0.9281 0.9348 1.06e-92 4fcm:A, 4fcm:B, 7suo:A, 7suo:B, 6ta7:D, 6ta7:E, 6ta7:F, 8th1:A, 8th1:B, 8th1:C, 8th1:D, 8th5:A, 8th5:C, 8th5:F, 8th5:B, 8th5:E, 8th5:D, 8th6:D, 8th6:C, 8th6:B, 8th6:A, 8th7:A, 8th7:B, 8v1l:A, 8v1l:B, 8v1l:C, 8v1l:D, 8v1l:E, 8v1l:F, 7xhf:A, 7xhf:B, 7xhg:B, 7xhg:C, 7xhg:D
2 8th5:I 119 129 0.9225 1.0000 0.9225 7.45e-79
3 5drv:A 131 129 0.8217 0.8092 0.8217 3.28e-77
4 3ujm:A 117 119 0.5814 0.6410 0.6303 3.89e-49 3ujm:B
5 1gyb:B 122 117 0.2946 0.3115 0.3248 1.44e-07 1gyb:D, 1gyb:C
6 2qiy:A 134 126 0.2248 0.2164 0.2302 0.001 2qiy:B
7 8ro2:L2 369 53 0.1240 0.0434 0.3019 0.96 6id0:U, 6id1:U
8 6uel:A 1333 55 0.1628 0.0158 0.3818 2.2 6uel:B
9 1cf7:B 82 40 0.1008 0.1585 0.3250 2.3
10 3u43:B 132 80 0.1473 0.1439 0.2375 2.6
11 7aqq:z 233 64 0.1318 0.0730 0.2656 4.1 7a23:q, 7a23:p, 7a24:q, 7a24:p, 7ar7:z, 7ar8:z, 7arb:z, 8bef:z, 8bpx:z, 8bq5:z, 8bq6:z
12 8e7f:A 614 34 0.1008 0.0212 0.3824 5.7
13 5im3:A 874 59 0.1473 0.0217 0.3220 7.0 5im3:B
14 6iih:A 446 63 0.1318 0.0381 0.2698 7.2 6iih:B, 6lb7:B, 6xqo:J
15 7w6d:A 104 27 0.0698 0.0865 0.3333 9.1 5b09:A, 7w6d:B, 7w6e:A, 7w6e:B, 7w6f:A, 7w6f:B
16 8hr8:G 830 30 0.0930 0.0145 0.4000 9.2 8hr9:G, 8hr9:N
17 8hra:C 852 30 0.0930 0.0141 0.4000 9.2 8hr8:A, 8hr8:C, 8hr8:F, 8hr8:H, 8hr9:A, 8hr9:C, 8hr9:F, 8hr9:H, 8hr9:I, 8hr9:J, 8hr9:M, 8hr9:O, 8hra:D, 8hra:E, 8hra:H, 8hra:A, 8hra:B, 8hra:G, 8hrb:D, 8hrb:E, 8hrb:C, 8hrb:H, 8hrb:A, 8hrb:B, 8hrb:M, 8hrb:P, 8hrb:L, 8hrb:R, 8hrb:F, 8hrb:K, 8hrb:Q, 8hrb:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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