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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MVLPNFKENLEKYAKLLVANGINVQPGHTLALSIDVEQRELAHLIVKEAYALGAHEVIVQWTDDVINREKFLHAPMERLD
NVPEYKIAEMNYLLENKASRLGVRSSDPGALNGVDADKLSASAKAMGLAMKPMRIATQSNKVSWTVAAAAGLEWAKKVFP
NAASDEEAVDFLWDQIFKTCRVYEADPVKAWEEHAAILKSKADMLNKEQFSALHYTAPGTDLTLGLPKNHVWESAGAVNA
QGEEFLPNMPTEEVFTAPDFRRADGYVTSTKPLSYNGNIIEGIKVTFKDGQIVDITAEKGDQVMKDLVFENAGARALGEC
ALVPDPSPISQSGITFFNTLFDENASNHLAIGAAYATSVVDGAEMSEEELEAAGLNRSDVHVDFMIGSNQMDIDGIREDG
TRVPLFRNGNWAN

The query sequence (length=413) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4icq:A 413 413 1.0000 1.0000 1.0000 0.0 4icq:B, 4icr:A, 4icr:B, 4ics:A, 4ics:B
2 1zjc:A 413 413 0.4794 0.4794 0.4794 2.45e-131
3 2ayi:A 397 406 0.4044 0.4207 0.4113 1.43e-104 2ayi:B, 2ayi:C, 2ayi:D, 2ayi:E
4 7atm:A 478 27 0.0339 0.0293 0.5185 1.9 7kiv:A, 7kiw:A, 7lc4:A, 7ly1:A, 3pbo:A
5 4kqq:A 520 27 0.0339 0.0269 0.5185 2.0 7ato:A, 7atw:A, 7atx:A, 7au0:A, 7au1:A, 7au8:A, 7au9:A, 7aub:A, 7auh:A, 5df7:A, 5df7:B, 5df8:A, 5df8:B, 5df9:A, 4fsf:A, 6hr6:A, 6hr9:A, 6i1e:A, 7jwl:A, 7kit:A, 4kqo:A, 4kqo:B, 4kqq:B, 4kqr:A, 4kqr:B, 4l0l:A, 3ocl:A, 3ocn:A, 7onk:A, 7onk:B, 4ool:A, 4oom:A, 3pbq:A, 3pbr:A, 3pbs:A, 3pbt:A, 6r3x:A, 6r42:A, 6un1:A, 6un3:A, 6vje:A, 6vot:A, 4wej:A, 4wek:A, 4wel:A, 6y6u:A, 6y6z:A
6 3r0h:D 199 62 0.0387 0.0804 0.2581 3.9 3r0h:A, 3r0h:C, 3r0h:B, 3r0h:E, 3r0h:H, 3r0h:F, 3r0h:G
7 7vbc:A 1477 89 0.0581 0.0162 0.2697 4.4 7vba:A, 7vbb:A
8 8dve:G 3944 144 0.0823 0.0086 0.2361 5.6 8dtb:A, 8dve:D, 8dve:A, 8dve:J
9 3wye:A 255 43 0.0412 0.0667 0.3953 5.7 3wye:B
10 8e73:A6 99 25 0.0315 0.1313 0.5200 6.8
11 1geg:E 256 43 0.0412 0.0664 0.3953 7.1 1geg:A, 1geg:B, 1geg:C, 1geg:D, 1geg:F, 1geg:G, 1geg:H
12 2yi9:A 771 115 0.0799 0.0428 0.2870 8.8 2yi9:B, 2yi9:C, 2yi9:D, 2yi9:E, 3zed:A, 3zed:B, 3zed:C
13 7umz:A 3927 95 0.0630 0.0066 0.2737 9.4 6g4s:s, 6g4w:s, 5j4z:G, 5j7y:G, 5j8k:G, 5tzs:Q, 7umz:D, 7umz:B, 7umz:C, 5wyj:UC, 5wyj:AG, 5wyk:AG, 5wyk:UC, 4wz7:A, 6xyw:AP
14 7k0s:A 4110 95 0.0630 0.0063 0.2737 9.7 7k0s:B, 7k0s:D, 7k0s:C, 7k0t:A, 7k0t:B, 7k0t:D, 7k0t:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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