Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MVLNSNELEHIHSTNHSVNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRIHFD
GLKGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPC
PVSMLISLPSGDPDEINNALVLLSEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQNRYVNWKEVANDNVVST
LHEINIIPENYGSDNVTYDPSDLIKLLSIPGRFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLR
PSNADFFKDVNTENRIRNTLGEYKRLDEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEKQEQLRAEAQ
RKQDEEKVDISFAT

The query sequence (length=414) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3j4s:A 414 414 0.9807 0.9807 0.9807 0.0 3m89:A, 2xka:A, 2xka:B, 2xka:C, 2xka:D, 2xka:E, 2xka:F, 2xka:G, 2xkb:A, 2xkb:B, 2xkb:D, 2xkb:E, 2xkb:F, 2xkb:G, 2xkb:I, 2xkb:J, 2xkb:K
2 2xkb:C 389 414 0.9227 0.9820 0.9227 0.0 2xkb:L
3 4ei7:A 382 208 0.1111 0.1204 0.2212 0.007 4ei7:B, 4ei9:A, 4ei9:B
4 4b46:A 330 255 0.1522 0.1909 0.2471 0.083
5 3cb2:A 432 180 0.1014 0.0972 0.2333 0.26 7as4:1, 7as4:2, 7as4:O, 7as4:P, 7as4:Q, 7as4:R, 7as4:S, 7as4:T, 7as4:U, 7as4:V, 7as4:W, 7as4:X, 7as4:Y, 7as4:Z, 3cb2:B, 8va2:g, 8va2:h, 1z5v:A, 1z5w:A
6 6v6s:k 370 146 0.0845 0.0946 0.2397 0.30 6v5v:g, 6v6s:a, 6v6s:b, 6v6s:c, 6v6s:d, 6v6s:e, 6v6s:f, 6v6s:g, 6v6s:h, 6v6s:i, 6v6s:j, 6v6s:l, 6v6s:m, 6v6s:t
7 3zid:A 360 169 0.0894 0.1028 0.2189 0.31 3zid:B
8 1odz:A 379 41 0.0411 0.0449 0.4146 1.1 1gvy:A, 1gw1:A, 1j9y:A, 1odz:B, 1r7o:A, 2whm:A
9 8uw3:A 1265 58 0.0507 0.0166 0.3621 1.7 7n8s:A, 7n94:A, 7n94:B, 8sp5:A, 8sp5:B, 8sp7:A, 8sxt:A, 8sxu:A, 1vyb:B
10 2yr4:A 674 88 0.0604 0.0371 0.2841 4.7 2yr4:B
11 2lhi:A 176 69 0.0459 0.1080 0.2754 5.1 1f55:A, 2lhh:A, 6oqq:B, 6oqq:D
12 3ayi:A 684 88 0.0604 0.0365 0.2841 5.3 3ayi:B, 3ayj:A, 3ayj:B, 3ayl:A, 3ayl:B, 2yr5:A, 2yr5:B, 2yr6:A, 2yr6:B
13 5yhx:N 146 23 0.0362 0.1027 0.6522 7.0 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
14 1ze1:A 308 58 0.0338 0.0455 0.2414 7.6 2ab4:A, 1r3e:A, 1ze1:B, 1ze1:C, 1ze2:A
15 6c5b:A 332 77 0.0362 0.0452 0.1948 8.6 6c5b:B
16 1ze1:D 284 58 0.0338 0.0493 0.2414 8.8
17 3hj1:B 387 84 0.0628 0.0672 0.3095 8.8 3hiy:A, 3hiy:B, 3hj1:A
18 5yjj:A 442 123 0.0676 0.0633 0.2276 9.7 5yjj:B, 5yjj:C, 5yjj:D, 5yjj:E, 5yjj:F

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218