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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTLADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSP
QLLFLDADRNTLIRRYSDTLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHG
IPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKH
RSVYIAEQLADYFRSRGKNVQSRHRTLEKR

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8b0i:D 282 282 1.0000 0.9574 0.9574 0.0 8b0i:A, 8b0i:B, 8b0j:A, 8b0j:B, 8b0j:D, 8b0j:C
2 8b0i:C 242 269 0.8963 1.0000 0.8996 3.53e-172
3 5mmi:U 96 85 0.0889 0.2500 0.2824 0.73 6eri:AT, 5h1s:V, 5mlc:V, 5mmm:U, 4v61:BV, 5x8p:U, 5x8t:U
4 4wxj:B 254 52 0.0704 0.0748 0.3654 2.7 4wxj:A
5 6sle:B 261 61 0.0815 0.0843 0.3607 2.8
6 6tqe:A 634 29 0.0407 0.0174 0.3793 3.0 6tqe:B, 6tqf:A, 6tqf:B
7 5yk1:A 401 39 0.0630 0.0424 0.4359 3.1 5yk0:A, 5yk2:A
8 5k78:B 351 28 0.0444 0.0342 0.4286 3.6 8dzk:A, 8dzk:B, 8dzk:C, 8dzk:D, 8dzk:E, 5k73:A, 5k73:B, 5k73:C, 5k73:D, 5k73:E, 5k77:A, 5k77:B, 5k77:C, 5k77:D, 5k77:E, 5k78:C, 5k78:D, 5k78:A, 5k78:E, 4pef:A, 4pef:B, 4pef:C, 4pef:D, 4pef:E, 4peg:A, 4peg:B, 4peg:C, 4peg:D, 4peg:E, 4peh:A, 4peh:B, 4peh:C, 4peh:D, 4peh:E, 4pei:A, 4pei:B, 4pei:C, 4pei:D, 4pei:E, 5uki:A
9 8bdb:L 138 35 0.0444 0.0870 0.3429 4.2 8bdb:N
10 2fah:C 608 20 0.0333 0.0148 0.4500 4.4 2faf:A, 2faf:B, 2fah:D, 2fah:A, 2fah:B, 2qzy:A, 2qzy:B
11 7tmm:A 593 22 0.0407 0.0185 0.5000 5.2 7tmo:A, 7tmo:E, 7tmp:A, 7tmq:A, 7tmr:E, 7tms:E, 7tmt:E
12 6njo:D 413 64 0.0667 0.0436 0.2812 5.5 6njo:B, 6njo:A, 6njo:C, 6njo:E, 6njp:B, 6njp:C, 6njp:D, 6njp:E, 2obl:A, 2obm:A
13 2f6r:A 230 26 0.0407 0.0478 0.4231 5.7
14 4clv:A 142 31 0.0481 0.0915 0.4194 9.1 4clv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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