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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MVKLSSDINLRDFGNNEYLSSVQDEAIRFATEQTDEILSLYSQHADTEGGRYVCADTFKELFPAFENKEDRATVNNAIHN
SAAVLSSTQFDEVLKRDEPQKKEVIFVTGIPGSGKTSTVKNMMMQDTTKLLFEGQLARPQSAFRKIEQCLERNLEVTIVA
VSMRAERASDNTYKRFNEYGRGASIGIMADIQANLPDGLKQIRDKFGDAVKIVGINQDRNSEFIDKFDDVIKMLSLGSQE
QILGRLAEKIQSDFDSGKISRECFNQAKGSMDLESVFAKKEYSQQRVVTNSKGVTLETKSANELWSKVEQIPVTGMKAGI
YLLGQAKKAETGQTYSGEIIYKDAAAVFQKTKNGLVRHNATHNEERLAKLVEIGQNVSIGSNKGKLIVKSLEYSA

The query sequence (length=395) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6epi:F 395 395 1.0000 1.0000 1.0000 0.0 6eph:B, 6eph:D, 6eph:F, 6eph:H, 6epi:B, 6epi:D, 6epi:H
2 2i13:B 144 56 0.0506 0.1389 0.3571 0.11
3 4a4a:A 886 210 0.1342 0.0598 0.2524 0.18 7mfk:A, 7mfl:A, 2vc9:A, 2vca:A, 2vcb:A, 2vcc:A
4 7z6h:K 439 29 0.0329 0.0296 0.4483 0.27
5 7y38:Y 466 25 0.0329 0.0279 0.5200 0.51 6jim:A, 6jim:B
6 7sh1:A 626 47 0.0430 0.0272 0.3617 1.6 7sh1:B
7 2qby:B 368 68 0.0557 0.0598 0.3235 1.6
8 3ndb:B 420 58 0.0481 0.0452 0.3276 1.8 2v3c:C, 2v3c:D, 4xco:D
9 4b3g:A 614 25 0.0278 0.0179 0.4400 1.9 4b3g:B
10 3iij:A 175 39 0.0354 0.0800 0.3590 2.5 3iik:A, 3iil:A, 3iim:A, 5jzv:A
11 3jvv:C 337 60 0.0430 0.0504 0.2833 2.6 3jvv:A, 3jvv:B
12 4fxp:B 200 35 0.0380 0.0750 0.4286 3.6 4fxp:A, 4fxp:C, 3uie:A, 3uie:B, 3uie:C
13 7jpo:A 352 20 0.0203 0.0227 0.4000 4.2 7jpr:A, 7jps:A, 5uj7:A, 5uj7:B, 5ujm:A
14 7jgr:A 401 20 0.0228 0.0224 0.4500 5.1 7jgs:A, 7jk2:A, 7jk3:A, 7jk4:A, 7jk5:A, 7jk6:A
15 8i6r:B 222 39 0.0380 0.0676 0.3846 6.1 8i6r:D, 8i6s:B, 8i6s:D
16 5ycd:B 193 46 0.0380 0.0777 0.3261 6.8 5x6k:A, 5x6k:B, 5x6l:A, 5x6l:B, 5xru:A, 5xru:B, 5xz2:A, 5xz2:B, 5ycb:A, 5ycb:B, 5ycc:A, 5ycc:B, 5ycd:A, 5ycf:B, 5ycf:A
17 1qf9:A 194 41 0.0405 0.0825 0.3902 8.0 1uke:A, 2ukd:A, 3ukd:A, 4ukd:A, 5ukd:A
18 7zel:A 827 40 0.0380 0.0181 0.3750 8.3 7zel:B, 7zep:B, 7zes:A, 7zes:B
19 1iyx:A 431 77 0.0608 0.0557 0.3117 9.2 1iyx:B
20 4z9m:C 375 114 0.0658 0.0693 0.2281 9.4 4z9m:A, 4z9m:B, 4z9m:D, 4z9m:E, 4z9m:F, 4z9m:G, 4z9m:H
21 4d26:A 430 33 0.0354 0.0326 0.4242 9.8 4d25:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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