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BioLiP
>protein
MVKLMIIEGEVVSGLGEGRYFLSLPPYKEIFKKILGFEPYEGTLNLKLDREFDINKFKYIETEDFEFNGKRFFGVKVLPI
KILIGNKKIDGAIVVPKKTYHSSEIIEIIAPMKLREQFNLKDGDVIKILIKGDK

The query sequence (length=134) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2oyn:A 137 134 0.9925 0.9708 0.9925 3.07e-90 2vbt:A, 2vbu:A, 2vbv:A, 2vbv:B
2 5trd:A 219 129 0.3582 0.2192 0.3721 7.84e-20 5trd:B
3 4o9g:A 138 118 0.2388 0.2319 0.2712 1.2 4o9e:A, 4o9e:B, 4o9g:B, 4zu5:B, 4zu7:A, 4zu7:B, 4zu7:C, 4zu7:D, 4zu7:E, 4zu7:F, 4zu7:G, 4zu7:H
4 7npa:A 618 33 0.1119 0.0243 0.4545 2.8 7npa:B, 7npa:C, 7npa:D, 7npa:E, 7npa:F, 7npa:G, 7npa:H, 7npa:I, 7npa:J, 7npa:K, 7npa:L, 7npa:M, 7npa:N, 7npa:O, 7npa:P
5 3jce:x 586 59 0.0970 0.0222 0.2203 6.4 3deg:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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