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BioLiP
>protein
MVIATIQAEDHSQQSGTQQETTTDTGGGKNVGYIDAGDWLSYAGTPVNIPSSGSYLIEYRVASQNGGGSLTFEEAGGAPV
HGTIAIPATGGWQTWTTIQHTVNLSAGSHQFGIKANAGGWNLNWIRINKTH

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1uyy:A 131 131 1.0000 1.0000 1.0000 1.49e-92 1uy0:A, 1uy0:B, 1uyx:A, 1uyx:B, 1uyy:B, 1uyz:A, 1uyz:B, 1uz0:A
2 5fui:A 124 124 0.4885 0.5161 0.5161 2.10e-40
3 5g56:A 707 118 0.3664 0.0679 0.4068 7.01e-18 5la0:A, 5la1:A, 5la2:A, 5la2:B, 2y8k:A
4 1w9t:A 134 127 0.3588 0.3507 0.3701 1.54e-12 1w9t:B, 1w9w:A
5 2v4v:A 129 128 0.3206 0.3256 0.3281 2.65e-12
6 1o8p:A 131 131 0.2977 0.2977 0.2977 2.02e-07 1nae:A, 1o8s:A, 1od3:A
7 5awp:A 596 90 0.2366 0.0520 0.3444 1.24e-06 5awq:A
8 5x7o:A 1247 133 0.2977 0.0313 0.2932 1.77e-04 5x7o:B, 5x7p:B, 5x7p:A, 5x7q:A, 5x7q:B, 5x7r:A, 5x7r:B, 5x7s:A, 5x7s:B
9 5x7o:A 1247 85 0.2137 0.0225 0.3294 0.74 5x7o:B, 5x7p:B, 5x7p:A, 5x7q:A, 5x7q:B, 5x7r:A, 5x7r:B, 5x7s:A, 5x7s:B
10 1gmm:A 126 113 0.2214 0.2302 0.2566 5.64e-04 1uxx:X
11 3c7g:A 488 108 0.2366 0.0635 0.2870 8.63e-04 3c7e:A, 3c7f:A, 3c7h:A, 3c7o:A
12 2cdo:A 138 130 0.2824 0.2681 0.2846 8.94e-04 2cdo:D, 2cdo:C, 2cdo:B, 2cdp:A, 2cdp:D, 2cdp:B, 2cdp:C
13 8j3y:A 392 127 0.2672 0.0893 0.2756 0.002 8j3x:A, 8j3x:B, 8j3y:B
14 2w47:A 135 83 0.1908 0.1852 0.3012 0.002 2w1w:A, 2w1w:B
15 5hxm:A 1060 88 0.1832 0.0226 0.2727 0.004 5f7u:A, 5hpo:A, 5i0d:A, 5i0d:B, 4kmq:A, 4kwu:A
16 2vzp:B 127 86 0.2290 0.2362 0.3488 0.012 2vzp:A, 2vzq:A, 2vzq:B, 2vzr:A, 2vzr:B
17 1uy1:A 132 108 0.1679 0.1667 0.2037 0.037 1uy2:A, 1uy3:A, 1uy4:A
18 2w87:A 139 72 0.1756 0.1655 0.3194 0.067 2w46:A, 2w46:B, 2w87:B
19 3hhj:B 131 57 0.1374 0.1374 0.3158 0.43 3hhj:A
20 5vit:A 548 77 0.1603 0.0383 0.2727 1.5 5vit:P, 5vit:I, 5vit:V
21 7y7b:b 176 32 0.0992 0.0739 0.4062 1.9 8wb4:6, 8wb4:P, 8xkl:P, 8xr6:1, 8xr6:7, 7y8a:b
22 3wnk:A 712 121 0.2366 0.0435 0.2562 2.1 3wnl:A, 3wnm:A, 3wnn:A, 3wnn:B, 3wno:A, 3wno:B, 3wnp:A, 3wnp:B
23 4quv:A 393 47 0.1069 0.0356 0.2979 4.6 4quv:B
24 8hcj:D 433 70 0.1679 0.0508 0.3143 5.7 8hcj:E, 8hcj:H, 8hcj:A, 8hcj:B, 8hcj:G, 8hcj:C, 8hcj:F
25 5a8a:A 155 37 0.1145 0.0968 0.4054 8.2 5a88:A, 5a88:B, 5a88:C, 5a88:D, 5a89:A, 5a89:B, 5a8a:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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