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BioLiP
>protein
MVGTCPECGAELRLENPELGELVVCEDCGAELEVVGLDPLRLEPAPEEAEDWGE

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ein:C 54 54 1.0000 1.0000 1.0000 2.32e-31 5eio:C, 3wwl:A, 3wwn:B
2 5k2m:F 53 50 0.5370 0.5472 0.5800 5.13e-12 5k2m:E
3 5k2m:N 33 25 0.3333 0.5455 0.7200 1.78e-04
4 3vpb:E 56 55 0.3704 0.3571 0.3636 0.013 3vpb:F
5 2nb9:A 49 47 0.2963 0.3265 0.3404 0.25
6 1rqg:A 606 32 0.2407 0.0215 0.4062 1.2
7 5li0:4 56 26 0.1852 0.1786 0.3846 2.5 7asm:Z, 7asn:b, 7aso:g, 7asp:Z, 6ddd:N, 6ddg:N, 6fxc:AZ, 6fxc:BZ, 5hkv:Z, 5hl7:Z, 6hma:Z, 5nd8:4, 5nd9:4, 5ngm:AZ, 7nhl:5, 7nhm:5, 5nrg:Z, 8p2f:5, 8p2g:5, 8p2h:5, 7p48:Z, 6s0x:Z, 6s0z:Z, 6s12:Z, 6s13:Z, 5t7v:LE, 5tcu:LE, 7ttu:N, 7ttw:N, 4wce:Z, 4wf9:Z, 4wfa:Z, 4wfb:Z, 6wqn:N, 6wqq:N, 6wrs:N, 6wru:N, 8y36:Z, 8y37:Z, 8y38:Z, 8y39:Z, 6yef:4
8 8ags:AAA 298 14 0.1667 0.0302 0.6429 2.7 8agm:AAA, 8agm:BBB, 8agm:CCC, 8agm:DDD, 8agn:AAA, 8agn:BBB, 8agn:CCC, 8agn:DDD, 8agp:AAA, 8agp:BBB, 8ags:BBB, 5ng7:B
9 3hh8:A 280 16 0.1667 0.0321 0.5625 2.9 8yj6:C, 8yj7:B, 8yj7:D, 8yj7:A, 8yj7:C, 8yj8:A, 8yj8:B
10 2l5u:A 61 28 0.2222 0.1967 0.4286 2.9
11 7enc:0 306 14 0.1667 0.0294 0.6429 3.1 1g25:A, 8gxq:HD, 8gxs:HD, 6nmi:H, 7nvw:3, 7nvx:3, 7nvy:3, 7nvz:3, 8wak:0, 8wal:0, 8wan:0, 8wao:0, 8wap:0, 8waq:0, 8war:0, 8was:0
12 7lbm:d 275 14 0.1667 0.0327 0.6429 3.1 8byq:7
13 5jne:A 351 35 0.2222 0.0342 0.3429 3.3 3i2d:A, 5jne:E
14 7nvr:3 214 14 0.1667 0.0421 0.6429 3.5
15 7egb:0 236 14 0.1667 0.0381 0.6429 3.6 7egc:0
16 1pft:A 50 30 0.2222 0.2400 0.4000 4.0
17 6nje:A 297 26 0.2037 0.0370 0.4231 4.6
18 6ndn:A 406 27 0.2222 0.0296 0.4444 4.9 1c0n:A, 5db5:A, 5db5:B, 1i29:A, 1jf9:A, 1kmj:A, 1kmk:A, 6mr2:A, 6mr6:A, 6mre:A, 6mrh:A, 6mri:A, 6o10:A, 6o11:A, 6o12:A, 6o13:A, 7rrn:A, 7ruj:A, 7rw3:A, 6uy5:A, 6uy5:B
19 3a9i:A 347 40 0.2222 0.0346 0.3000 5.7 2ztj:A, 2ztk:A, 2zyf:A
20 6n7r:I 147 34 0.2407 0.0884 0.3824 6.5
21 7paj:9 393 24 0.2407 0.0331 0.5417 6.7 7pak:9, 7pha:9, 7pi9:9, 7pip:9
22 7d6l:A 142 29 0.2037 0.0775 0.3793 7.5
23 2ppt:A 149 45 0.2963 0.1074 0.3556 8.7 2ppt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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