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BioLiP
>protein
MVGTCPECGAELRLENPELGELVVCEDCGAELEVVGLDPLRLEPAP

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ein:C 54 46 1.0000 0.8519 1.0000 8.27e-26 5eio:C, 3wwl:A, 3wwn:B
2 5k2m:F 53 42 0.5000 0.4340 0.5476 9.31e-08 5k2m:E
3 2nb9:A 49 47 0.3478 0.3265 0.3404 0.26
4 1rqg:A 606 32 0.2826 0.0215 0.4062 0.48
5 5k2m:N 33 17 0.2609 0.3636 0.7059 1.8
6 8ags:AAA 298 14 0.1957 0.0302 0.6429 1.9 8agm:AAA, 8agm:BBB, 8agm:CCC, 8agm:DDD, 8agn:AAA, 8agn:BBB, 8agn:CCC, 8agn:DDD, 8agp:AAA, 8agp:BBB, 8ags:BBB, 5ng7:B
7 7lbm:d 275 14 0.1957 0.0327 0.6429 2.0 8byq:7
8 7enc:0 306 14 0.1957 0.0294 0.6429 2.0 1g25:A, 8gxq:HD, 8gxs:HD, 6nmi:H, 7nvw:3, 7nvx:3, 7nvy:3, 7nvz:3, 8wak:0, 8wal:0, 8wan:0, 8wao:0, 8wap:0, 8waq:0, 8war:0, 8was:0
9 5jne:A 351 35 0.2609 0.0342 0.3429 2.3 3i2d:A, 5jne:E
10 5li0:4 56 26 0.2174 0.1786 0.3846 2.4 7asm:Z, 7asn:b, 7aso:g, 7asp:Z, 6ddd:N, 6ddg:N, 6fxc:AZ, 6fxc:BZ, 5hkv:Z, 5hl7:Z, 6hma:Z, 5nd8:4, 5nd9:4, 5ngm:AZ, 7nhl:5, 7nhm:5, 5nrg:Z, 8p2f:5, 8p2g:5, 8p2h:5, 7p48:Z, 6s0x:Z, 6s0z:Z, 6s12:Z, 6s13:Z, 5t7v:LE, 5tcu:LE, 7ttu:N, 7ttw:N, 4wce:Z, 4wf9:Z, 4wfa:Z, 4wfb:Z, 6wqn:N, 6wqq:N, 6wrs:N, 6wru:N, 8y36:Z, 8y37:Z, 8y38:Z, 8y39:Z, 6yef:4
11 6ndn:A 406 27 0.2609 0.0296 0.4444 3.2 1c0n:A, 5db5:A, 5db5:B, 1i29:A, 1jf9:A, 1kmj:A, 1kmk:A, 6mr2:A, 6mr6:A, 6mre:A, 6mrh:A, 6mri:A, 6o10:A, 6o11:A, 6o12:A, 6o13:A, 7rrn:A, 7ruj:A, 7rw3:A, 6uy5:A, 6uy5:B
12 7paj:9 393 24 0.2826 0.0331 0.5417 3.4 7pak:9, 7pha:9, 7pi9:9, 7pip:9
13 6nje:A 297 26 0.2391 0.0370 0.4231 3.7
14 7oqy:Y 92 25 0.2174 0.1087 0.4000 3.8
15 1pft:A 50 30 0.2609 0.2400 0.4000 4.0
16 7nvr:3 214 14 0.1957 0.0421 0.6429 6.0
17 7egb:0 236 15 0.1957 0.0381 0.6000 6.2 7egc:0
18 3vpb:E 56 34 0.2609 0.2143 0.3529 7.5 3vpb:F
19 6n7r:I 147 34 0.2826 0.0884 0.3824 7.6
20 6vr7:A 485 26 0.2609 0.0247 0.4615 7.6
21 3av4:A 1140 42 0.3043 0.0123 0.3333 8.0 3av5:A, 3av6:A, 4da4:B, 5gut:A, 5guv:A, 3pt9:A, 6w8v:B, 6w8w:A, 6w8w:B, 5wy1:A
22 6wmp:D 1159 26 0.2609 0.0104 0.4615 9.0 6wmr:D, 6wmt:D
23 7d6l:A 142 29 0.2391 0.0775 0.3793 9.2
24 2lcq:A 161 12 0.1304 0.0373 0.5000 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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