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BioLiP
>protein
MVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFANQLVKWDVKLKEDLDVMLAKARAANE

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aqq:d 75 66 1.0000 0.8800 1.0000 3.03e-44 7a23:i, 7a24:i, 7ar7:d, 7ar8:d, 7arb:d
2 6nr2:A 859 40 0.2121 0.0163 0.3500 0.56 6nr2:B, 6nr2:C, 6nr2:D, 6nr3:A, 6nr3:B, 6nr3:C, 6nr3:D, 6o6a:A, 6o6a:B, 6o6a:C, 6o6a:D, 6o6r:A, 6o6r:B, 6o6r:C, 6o6r:D
3 6o72:A 858 40 0.2121 0.0163 0.3500 0.61 6o72:B, 6o72:C, 6o72:D
4 4ls3:A 302 53 0.2576 0.0563 0.3208 0.62 4ls3:B
5 6o77:A 872 40 0.2121 0.0161 0.3500 0.63 9b6i:A, 9b6i:B, 9b6i:C, 9b6i:D, 6o77:D, 6o77:B, 6o77:C
6 9b6h:B 934 40 0.2121 0.0150 0.3500 0.63 9b6d:A, 9b6d:B, 9b6d:C, 9b6d:D, 9b6e:B, 9b6e:A, 9b6e:C, 9b6e:D, 9b6f:A, 9b6f:B, 9b6f:C, 9b6f:D, 9b6g:A, 9b6g:B, 9b6g:C, 9b6g:D, 9b6h:A, 9b6h:C, 9b6h:D, 9b6k:A, 9b6k:B, 9b6k:C, 9b6k:D, 7wrb:A, 7wrb:B, 7wrb:C, 7wrb:D, 7wrc:A, 7wrc:B, 7wrc:C, 7wrc:D, 7wrd:A, 7wrd:B, 7wrd:C, 7wrd:D, 7wre:A, 7wre:B, 7wre:C, 7wre:D, 7wrf:A, 7wrf:B, 7wrf:C, 7wrf:D
7 8bdc:A 963 40 0.2121 0.0145 0.3500 0.65 8bdc:B, 8bdc:C, 8bdc:D
8 8e4n:A 901 40 0.2121 0.0155 0.3500 0.68 9b6j:A, 9b6j:B, 9b6j:C, 9b6j:D, 8e4l:A, 8e4l:B, 8e4l:C, 8e4l:D, 8e4m:A, 8e4m:B, 8e4m:C, 8e4m:D, 8e4n:B, 8e4n:C, 8e4n:D, 8e4o:A, 8e4o:D, 8e4o:B, 8e4o:C, 8e4p:A, 8e4p:B, 8e4p:C, 8e4p:D
9 6s47:Bi 952 27 0.1364 0.0095 0.3333 2.8
10 7tcm:A 373 14 0.1364 0.0241 0.6429 3.8 7tcm:B
11 8qoy:A 1036 28 0.1667 0.0106 0.3929 6.3
12 8smr:E 468 28 0.1970 0.0278 0.4643 6.4 8snh:E
13 1f5s:A 210 34 0.1970 0.0619 0.3824 6.7 1f5s:B, 1j97:A, 1j97:B, 1l7m:A, 1l7m:B, 1l7n:A, 1l7n:B, 1l7o:A, 1l7o:B, 1l7p:A, 1l7p:B
14 6hiv:CR 314 22 0.1061 0.0223 0.3182 6.9 6hiw:CR, 6hiy:CR, 6hiz:CR, 7pub:CR
15 5ccv:H 767 38 0.1818 0.0156 0.3158 8.2
16 1gl3:A 367 14 0.1364 0.0245 0.6429 8.7 1gl3:B
17 5ccv:A 849 38 0.1818 0.0141 0.3158 9.1 6h80:A, 6h9r:A, 6izz:A
18 7rav:A 773 14 0.1212 0.0103 0.5714 9.7
19 2oap:2 503 23 0.1364 0.0179 0.3913 9.7 2oap:1, 2oaq:2
20 5yud:A 1238 14 0.1212 0.0065 0.5714 9.8
21 8gzp:A 854 38 0.1818 0.0141 0.3158 9.8 4c11:A, 5ccv:B, 5ccv:C, 5ccv:D, 5ccv:F, 5ccv:G, 5dto:A, 5f3t:A, 5f3z:A, 5f41:A, 8gzq:A, 4hhj:A, 5hmw:A, 5hmx:A, 5hmy:A, 5hmz:A, 5hn0:A, 5i3p:A, 5i3q:A, 5iq6:A, 6j00:A, 2j7u:A, 2j7w:A, 5jjr:A, 5jjs:A, 4v0q:A, 4v0r:A, 6xd0:A
22 8gzr:A 880 38 0.1818 0.0136 0.3158 9.8 8bcr:A, 8bcr:B, 4c11:B, 5ccv:E, 4ctj:A, 4ctj:C, 4ctk:A, 4ctk:C, 5cuq:A, 5cuq:B, 5e9q:A, 5e9q:C, 5ec8:A, 5ec8:C, 5ehg:A, 5ehg:C, 5ehi:A, 5ehi:C, 5eif:A, 5eif:C, 5eiw:A, 5eiw:C, 5ekx:A, 5ekx:B, 3p8z:A, 3p8z:C, 3p97:A, 3p97:C, 4r8s:A, 4r8s:B, 3vws:A, 2xbm:B, 2xbm:A, 2xbm:C, 2xbm:D, 6xd1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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