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BioLiP
>protein
MVEPLLDGLVLGLVFATLGGLFYAAYQQYKRPNELGG

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2e76:G 37 37 1.0000 1.0000 1.0000 1.11e-20 4h13:G, 4i7z:G, 4pv1:G
2 1q90:G 30 29 0.5405 0.6667 0.6897 7.86e-07
3 7zyv:G 34 34 0.4865 0.5294 0.5294 5.51e-06
4 7zxy:G 35 35 0.6216 0.6571 0.6571 0.002 7r0w:O, 7r0w:G, 7zxy:O
5 4eis:A 225 17 0.2703 0.0444 0.5882 0.43 4eis:B
6 4nf2:A 307 13 0.2432 0.0293 0.6923 2.3 4nf2:B, 4nf2:C
7 7jwq:C 212 15 0.1892 0.0330 0.4667 2.7 7jwp:A, 7jwp:C, 7jwp:E, 7jwp:G, 7jwp:I, 7jwp:K, 7jwp:M, 7jwp:O, 7jwq:A
8 2wvk:A 391 20 0.2432 0.0230 0.4500 4.9 2wvk:B, 2wvl:A, 2wvl:B, 2wvm:A, 2wvm:B
9 6d0j:B 396 33 0.3514 0.0328 0.3939 6.7 6d0j:A, 6d0k:A, 6d0k:B, 6d0n:A, 6d0n:B
10 5thk:G 265 29 0.3514 0.0491 0.4483 9.2 5thk:A, 5thk:B, 5thk:C, 5thk:D, 5thk:E, 5thk:F, 5thk:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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