Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MVEIILSHLIFDQAYFSKVWPYMDSEYFESGPAKNTFKLIKSHVNEYHSVPSINALNVALENSSFTETEYSGVKTLISKL
ADSPEDHSWLVKETEKYVQQRAMFNATSKIIEIQTNAELPPEKRNKKMPDVGAIPDIMRQALSISFDSYVGHDWMDDYEA
RWLSYMNKARKVPFKLRILNKITKGGAETGTLNVLMAGVNVGKSLGLCSLAADYLQLGHNVLYISMQMAEEVCAKRIDAN
MLDVSLDDIDDGHISYAEYKGKMEKWREKSTLGRLIVKQYPTGGADANTFRSLLNELKLKKNFVPTIIIVDYLGICKSCR
IRVYSENSYTTVKAIAEELRALAVETETVLWTAAQVGKQAWDSSDVNMSDIAESAGLPATADFMLAVIETEELAAAEQQL
IKQIKSRYGDKNKWNKFLMGVQKGNQKWVEIE

The query sequence (length=432) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8dtp:B 432 432 0.9977 0.9977 0.9977 0.0 8dtp:C, 8dtp:D, 8dtp:E, 8dtp:F, 8dtp:A, 8due:B, 8due:C, 8due:D, 8due:E, 8due:F, 8due:A, 8duo:A, 8duo:B, 8duo:C, 8duo:D, 8duo:E, 8duo:F, 8dvf:B, 8dvf:C, 8dvf:D, 8dvf:E, 8dvf:F, 8dvf:A, 8dvi:B, 8dvi:C, 8dvi:D, 8dvi:E, 8dvi:F, 8dvi:A, 8dw6:B, 8dw6:C, 8dw6:D, 8dw6:E, 8dw6:F, 8dw6:A, 8g0z:B, 8g0z:C, 8g0z:D, 8g0z:E, 8g0z:F, 8g0z:A, 8gao:B, 8gao:C, 8gao:D, 8gao:E, 8gao:F, 8gao:A
2 6bbm:D 455 222 0.1296 0.1231 0.2523 0.005 6bbm:F, 6bbm:B, 6bbm:C, 6bbm:E, 6qel:A, 6qel:B, 6qel:C, 6qel:D, 6qel:E, 6qel:F, 6qem:A, 6qem:B, 6qem:C, 6qem:D, 6qem:E, 6qem:F, 7t20:B, 7t20:C, 7t20:E, 7t20:F, 7t20:D, 7t21:A, 7t21:B, 7t21:C, 7t21:D, 7t21:E, 7t21:F, 7t22:A, 7t22:B, 7t22:C, 7t22:D, 7t22:E, 7t22:F, 7t23:A, 7t23:B, 7t23:C, 7t23:D, 7t23:E, 7t23:F
3 6bbm:A 405 222 0.1296 0.1383 0.2523 0.005
4 6f3k:A 353 106 0.0625 0.0765 0.2547 0.033 1xfo:A, 1xfo:B, 1xfo:C, 1xfo:D, 1y0r:A, 1y0y:A
5 4esv:C 434 217 0.1111 0.1106 0.2212 0.036 4esv:A, 4esv:B, 4esv:D, 4esv:E, 4esv:F, 4esv:G, 4esv:H, 4esv:I, 4esv:J, 4esv:K, 4esv:L, 2vye:A, 2vye:B
6 4zc0:B 434 202 0.0972 0.0968 0.2079 0.61 3gxv:A
7 1s6i:A 182 64 0.0370 0.0879 0.2500 1.3
8 5lkm:A 390 80 0.0532 0.0590 0.2875 2.1 5lkm:C
9 3vif:A 473 53 0.0417 0.0381 0.3396 2.4 3ahz:A, 3ai0:A, 3vig:A, 3vij:A, 3vik:A, 3vil:A, 3vim:A, 3vin:A, 3vio:A, 3vip:A
10 4ct4:B 378 85 0.0440 0.0503 0.2235 2.9 5anr:B, 4ct4:D, 1vec:A, 2wax:C, 2way:A
11 8qhp:A 410 211 0.1111 0.1171 0.2275 4.6 8qhp:B
12 3dlj:A 471 112 0.0440 0.0403 0.1696 6.6 3dlj:B
13 5ek8:A 668 82 0.0463 0.0299 0.2439 6.7
14 4ifu:A 330 32 0.0324 0.0424 0.4375 8.3 4ifw:A, 4ifx:A, 4ifz:A, 4ig1:A, 7mgt:A, 4xdr:A, 4xdt:A, 4xdu:A
15 4ylf:A 276 52 0.0370 0.0580 0.3077 8.7 4ylf:C, 4yry:A, 4yry:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218