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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEA
KRLEEALREKEARLEALLLQVPLPPWPGAPVGGEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWEPRISQVSGSRSYA
LKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILP
YEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVAT
GDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDG
RVRVPQALIPYMGKEVLEPCG

The query sequence (length=421) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ser:B 421 421 1.0000 1.0000 1.0000 0.0 1ses:A, 1ses:B, 1set:A, 1set:B
2 3err:A 527 351 0.7862 0.6281 0.9430 0.0 3err:B, 1ser:A
3 3err:A 527 67 0.0855 0.0683 0.5373 7.71e-12 3err:B, 1ser:A
4 2dq3:A 425 426 0.3967 0.3929 0.3920 4.99e-91 2dq3:B
5 6he3:A 422 427 0.3895 0.3886 0.3841 2.39e-87 6hdz:A, 6hdz:B, 6he1:A, 6he1:B, 6he3:B
6 2dq0:A 447 450 0.3824 0.3602 0.3578 9.14e-87 2dq0:B, 2zr2:A, 2zr2:B
7 6x94:A 413 427 0.3587 0.3656 0.3536 1.26e-77
8 6h9x:A 428 423 0.3610 0.3551 0.3593 2.78e-77 7ap1:A, 6hhy:A, 6hhz:A, 6hi0:A, 6r1m:A, 6r1m:B, 6r1o:A
9 6r1n:A 420 418 0.3420 0.3429 0.3445 3.88e-75
10 1wle:B 469 433 0.3468 0.3113 0.3372 6.58e-67 8ffy:B, 7tzb:A, 7tzb:B, 7u2b:B, 1wle:A
11 7u2a:B 442 424 0.3515 0.3348 0.3491 9.76e-66 8ffy:A, 7u2a:A, 7u2b:A
12 6blj:A 473 331 0.2708 0.2410 0.3444 1.13e-58
13 3qo8:A 441 420 0.3017 0.2880 0.3024 1.94e-58 3qo7:A
14 6blj:B 435 334 0.2684 0.2598 0.3383 6.50e-58 6blj:C
15 8p7b:B 455 315 0.2423 0.2242 0.3238 1.56e-56 8p7b:D, 8p7c:B, 8p7c:D, 8p7d:B, 4rqe:C, 4rqf:A
16 3lss:A 438 347 0.2613 0.2511 0.3170 8.17e-56
17 3lss:B 468 350 0.2565 0.2308 0.3086 4.71e-55 6rlt:A, 6rlt:B, 6rlu:A, 6rlu:B, 6rlv:A, 6rlv:B
18 4l87:A 476 323 0.2423 0.2143 0.3158 6.06e-55 8p7d:D, 4rqe:A, 4rqf:B
19 6ote:A 409 434 0.2969 0.3056 0.2880 3.29e-51
20 5eiu:A 134 60 0.0903 0.2836 0.6333 1.06e-16 5eiu:D, 5f7t:E, 5f7t:F, 5f7t:H, 5f7t:L, 5iea:A, 5iea:B, 5iea:C, 5iea:D, 5iea:F, 5iea:K
21 1nj1:A 463 268 0.1330 0.1210 0.2090 1.14e-06 1nj2:A, 1nj5:A, 1nj6:A
22 5va4:A 123 69 0.0546 0.1870 0.3333 1.52e-04
23 3ugt:C 427 114 0.0665 0.0656 0.2456 0.004 4eo4:A, 4eo4:B, 4eo4:C, 4eo4:D, 3ugq:A, 3ugt:A, 3ugt:B, 3ugt:D, 3uh0:A, 4yye:A, 4yye:B
24 4ttv:A 403 264 0.1259 0.1315 0.2008 0.022 4hwt:A, 4hwt:B, 4p3n:A, 4p3n:B, 4p3n:C, 4p3n:D, 4ttv:B, 4ttv:C, 4ttv:D
25 3w3s:A 527 81 0.0594 0.0474 0.3086 0.49
26 3ial:B 505 149 0.0808 0.0673 0.2282 0.69 3ial:A
27 8w8j:A 572 102 0.0641 0.0472 0.2647 2.6 8w8j:B, 8w8l:A, 8w8l:B, 8w9i:A, 8w9i:B
28 6k42:R 270 84 0.0618 0.0963 0.3095 3.1
29 3ays:A 357 67 0.0475 0.0560 0.2985 4.1
30 4j0h:A 470 26 0.0285 0.0255 0.4615 4.4 4j0h:B, 4j0j:A, 4j0j:B, 4j0k:A, 4j0k:B, 4jui:A, 4jui:B, 3wa7:A
31 3d48:P 165 46 0.0356 0.0909 0.3261 4.5
32 5n6u:A 811 116 0.0641 0.0333 0.2328 5.7 5n6u:B, 5n6u:C, 5n6u:D
33 8txz:A 858 71 0.0594 0.0291 0.3521 5.9
34 8tzg:A 906 71 0.0594 0.0276 0.3521 5.9
35 4ryv:A 155 82 0.0475 0.1290 0.2439 6.1
36 5irr:B 281 56 0.0428 0.0641 0.3214 6.3 5irr:A
37 2no5:B 226 17 0.0238 0.0442 0.5882 7.8 2no5:A
38 8tnv:A 393 31 0.0380 0.0407 0.5161 7.8 8tnv:B
39 8k82:CN 112 98 0.0546 0.2054 0.2347 8.1 6tb3:BW
40 1zsg:A 65 30 0.0285 0.1846 0.4000 8.5 2p4r:A, 5sxp:B, 5sxp:D, 5sxp:A, 5sxp:C
41 5zy9:C 400 270 0.1330 0.1400 0.2074 8.9 5zy9:D, 5zy9:E
42 3wgc:B 333 34 0.0356 0.0450 0.4412 9.3 3wgb:A, 3wgb:B, 3wgb:C, 3wgb:D, 3wgc:A, 3wgc:C, 3wgc:D
43 6exn:O 320 44 0.0285 0.0375 0.2727 9.7 6bk8:S

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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