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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MVAYQGLSLGLVCAVVALLLLTGNIMTHGTIAEQQMQDRLATLREVLPQSLYDNNPLADSFKVQDAELGEVEVLPARLQG
KLTAVVFQGRNIGYGGPIEQMMSVDAQGKILGVRVLTHKETPGLADKIEASRSDWIKVFDGLSLENTALDKWKVKKDGGQ
FDQFAGATITPRAVVKTVLQGLQFQARHAEQLKA

The query sequence (length=194) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ahx:G 197 194 1.0000 0.9848 1.0000 2.82e-142 8rb8:G, 8rb9:G, 8rbm:G, 8rbq:G
2 7zc6:G 187 187 0.2990 0.3102 0.3102 1.13e-08
3 8p2b:A 83 90 0.1443 0.3373 0.3111 3.23e-05 8p2b:B
4 4xhf:B 225 104 0.1701 0.1467 0.3173 1.1 4xhf:A, 4xhf:C, 4xhf:D
5 6iaa:A 815 88 0.1340 0.0319 0.2955 1.2 6iaa:B
6 6pgw:A 427 36 0.0619 0.0281 0.3333 1.2 5co1:A, 5co1:B, 5co1:C, 5co1:D
7 2y7h:B 529 64 0.0928 0.0340 0.2812 2.3 2y7h:C
8 7lj2:A 507 63 0.0722 0.0276 0.2222 2.5 7lha:A, 7lha:B, 7lj2:B
9 3lij:A 465 73 0.1186 0.0495 0.3151 2.8 3l19:A, 3l19:B
10 8bgw:A 750 52 0.0928 0.0240 0.3462 5.8 8bgw:B, 6qq5:A, 6qq5:B, 6qq6:A, 6qq6:B, 6t6v:A
11 7e24:D 251 39 0.0722 0.0558 0.3590 7.2 7e24:A, 7e24:B, 7e24:C, 7e3x:A, 7e3x:B
12 7mjr:A 899 33 0.0619 0.0133 0.3636 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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