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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTYKLILNGKTHKGVLTIEAVDAATAEKHFKQHANDLGVDGEWTYDDATKTFTVTE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6nl8:A 56 56 0.9643 0.9643 0.9643 4.58e-34 6nla:A
2 2i2y:A 150 56 0.8571 0.3200 0.8571 2.85e-27 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
3 5o94:A 56 56 0.8036 0.8036 0.8036 2.62e-26 5ofs:A, 5ofs:B, 5ofs:C, 5ofs:D
4 7rxc:B 439 55 0.7679 0.0979 0.7818 5.49e-22 7rxd:B
5 6nl6:B 56 56 0.7500 0.7500 0.7500 2.06e-16 6nl6:C, 6nl6:D, 6nl7:B
6 5lde:B 225 52 0.6607 0.1644 0.7115 8.17e-15 5lde:A
7 8jxr:C 341 55 0.5000 0.0821 0.5091 1.69e-06
8 2q4a:B 322 21 0.1964 0.0342 0.5238 1.7 2q4a:A, 1y0z:A, 1y0z:B
9 6ffl:A 383 46 0.2143 0.0313 0.2609 2.1
10 4d3i:A 363 44 0.2321 0.0358 0.2955 2.5 2amo:A, 2amo:B, 2an0:A, 2an2:A, 4d3j:A, 4d3k:A, 4d3k:B, 4d3m:A, 4d3n:A, 4d3o:A, 4d3t:A, 4d3u:A, 4d3v:A, 4d7h:A, 4d7i:A, 4d7j:A, 2fbz:X, 2fc1:A, 2fc2:A, 2fc2:B, 5g65:A, 5g66:A, 5g67:A, 5g68:A, 5g69:A, 5g6a:A, 5g6b:A, 5g6c:A, 5g6d:A, 5g6e:A, 5g6f:A, 5g6g:A, 5g6h:A, 5g6i:A, 5g6j:A, 5g6k:A, 5g6l:A, 5g6m:A, 5g6n:A, 5g6o:A, 5g6p:A, 5g6q:A, 4lwa:A, 4lwb:A, 1m7v:A, 1m7z:A, 4ug5:A, 4ug6:A, 4ug7:A, 4ug8:A, 4ug9:A, 4uga:A, 4ugb:A, 4ugc:A, 4ugd:A, 4uge:A, 4ugf:A, 4ugg:A, 4ugh:A, 4ugi:A, 4ugj:A, 4ugk:A, 4ugl:A, 4ugm:A, 4ugn:A, 4ugo:A, 4ugp:A, 4ugq:A, 4ugr:A, 4ugs:A, 4ugt:A, 4ugu:A, 4ugv:A, 4ugw:A, 4ugx:A, 4ugy:A, 4uqr:A, 4uqs:A, 6xcx:A, 6xk3:A, 6xk4:A, 6xk5:A, 6xk6:A, 6xk7:A, 6xk8:A, 6xmc:A
11 7nrr:AAA 329 32 0.2500 0.0426 0.4375 3.1 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
12 5aob:A 278 19 0.1786 0.0360 0.5263 3.5 5aoc:A, 7bfr:A
13 4nv2:A 264 21 0.1607 0.0341 0.4286 3.6 3kp9:A, 4nv5:A, 4nv5:B, 4nv6:A
14 7mqa:LW 452 21 0.1786 0.0221 0.4762 4.0
15 7mq8:LW 453 21 0.1786 0.0221 0.4762 4.0 7mq9:LW
16 7uoo:4 538 19 0.1607 0.0167 0.4737 5.2 6ft6:4, 3jct:4, 6m62:4, 6rzz:r, 7uqb:4, 7uqz:4, 7v08:4, 6ylg:4, 6ylh:4
17 8hfr:pT 580 19 0.1607 0.0155 0.4737 6.2 5apn:x, 5apo:x, 7z34:4
18 2gh9:A 378 36 0.2143 0.0317 0.3333 7.1
19 4l9o:A 330 14 0.1607 0.0273 0.6429 8.3 4l9o:B
20 2yku:A 433 34 0.1964 0.0254 0.3235 8.7 4ao4:A, 4ao4:B, 4ao4:C, 2yku:B, 2yku:C, 2ykv:A, 2ykv:B, 2ykv:C, 2ykx:A, 2ykx:B, 2ykx:C, 2yky:A, 2yky:B, 2yky:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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