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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTYKDYTGLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQPDP
DLKKWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAKHTVGSAQMSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKA
VAYETARTVAFLASKAQPIYPKTIETYNAYIPYL

The query sequence (length=194) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ogi:B 194 194 1.0000 1.0000 1.0000 2.50e-143 2ogi:A
2 8wmy:A 198 194 0.6701 0.6566 0.6701 7.59e-95 8wmy:B
3 8jk9:A 195 193 0.6546 0.6513 0.6580 1.31e-94 8jja:A, 8jjk:A, 8jk5:A, 8jk8:A, 8jka:A, 8jkp:A, 8jkr:A, 8yt5:A
4 2o08:A 187 181 0.4124 0.4278 0.4420 1.41e-51 2o08:B
5 3ccg:A 189 174 0.3505 0.3598 0.3908 1.31e-32
6 3tmb:B 318 93 0.1443 0.0881 0.3011 0.090 3tm8:A, 3tm8:B, 3tmb:A, 3tmc:A, 3tmc:B, 3tmd:A
7 3q2r:A 192 73 0.0979 0.0990 0.2603 0.36
8 3q8f:A 645 86 0.1237 0.0372 0.2791 1.0
9 1t6b:X 676 86 0.1237 0.0355 0.2791 1.0 1acc:A, 3hvd:A, 3hvd:C, 3hvd:D, 3hvd:E, 3hvd:F, 3hvd:G, 3hvd:H, 3q8b:A, 3q8c:A
10 2pq7:A 174 52 0.1031 0.1149 0.3846 1.1
11 7kxr:A 562 86 0.1237 0.0427 0.2791 1.1 3j9c:A, 7kxr:B, 7kxr:C, 7kxr:D, 7kxr:E, 7kxr:F, 7kxr:G, 6psn:A, 6psn:B, 6psn:C, 6psn:D, 6psn:E, 6psn:F, 6psn:G, 6uzb:A, 6uzb:B, 6uzb:C, 6uzb:D, 6uzb:E, 6uzb:F, 6uzb:G, 6uzd:A, 6uzd:B, 6uzd:C, 6uzd:D, 6uzd:E, 6uzd:F, 6uzd:G, 6uze:A, 6uze:B, 6uze:C, 6uze:D, 6uze:E, 6uze:F, 6uze:G
12 6cu5:A 314 58 0.0773 0.0478 0.2586 1.1 6cu5:B, 8ft7:A, 8ft7:B
13 4h2a:A 704 86 0.1237 0.0341 0.2791 1.1 4ee2:A, 5fr3:A, 3hvd:B, 3kwv:A, 3kwv:B, 3kwv:D, 3kwv:E, 3mhz:A, 4nam:A, 3q8a:A, 3q8e:A, 3tew:A, 3tex:A, 3tey:A, 3tez:A, 1tzn:A, 1tzn:B, 1tzn:C, 1tzn:D, 1tzn:E, 1tzn:F, 1tzn:G, 1tzn:H, 1tzn:I, 1tzn:J, 1tzn:K, 1tzn:L, 1tzn:M, 1tzn:O, 1tzo:A, 1tzo:B, 1tzo:C, 1tzo:D, 1tzo:E, 1tzo:F, 1tzo:G, 1tzo:H, 1tzo:I, 1tzo:J, 1tzo:K, 1tzo:L, 1tzo:M, 1tzo:O, 6vra:A, 6vra:B, 6vra:C, 6vra:D, 6vra:E, 6vra:F, 6vra:G, 6vra:H, 6wjj:A, 6wjj:B, 6wjj:C, 6wjj:F, 6wjj:D, 6wjj:G, 6wjj:E, 6wjj:H
14 8e9b:B 387 62 0.0876 0.0439 0.2742 3.1 8uxw:B, 8uxx:B, 6w17:B, 6w18:B
15 8d49:A 1072 60 0.1082 0.0196 0.3500 3.7
16 6qrz:A 274 48 0.0670 0.0474 0.2708 3.7
17 3djb:A 188 33 0.0722 0.0745 0.4242 3.9 3djb:B
18 8d4a:A 1207 60 0.1082 0.0174 0.3500 4.1 8d4b:A
19 3odm:C 530 49 0.0722 0.0264 0.2857 4.3 3odm:A, 3odm:D, 3odm:E, 3odm:H
20 6hun:A 428 52 0.1031 0.0467 0.3846 4.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218