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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTWNFHQYYTNRNDGLMGKLVLTDEEKNNLKALRKIIRLRTRDVFEEAKGIAKAVKKSALTFEIIQEKVSTTQIKHLSDS
EQREVAKLIYEMDDDARDEFLGLTPRFWTQGSFQYDTLNRPFQPGQEMDIDDGTYMPMPIFESEPKIGHSLLILLVDASL
KSLVAENHGWKFEAKQTCGRIKIEAEKTHINVPMYAIPKDEFQKKQIALEANRTYELDSENVNLALREGDRKWINSDPKI
VEDWFNDSCIRIGKHLRKVCRFMKAWRDAQWDVGGPSSISLMAATVNILDSVAHDASDLGETMKIIAKHLPSEFARGVES
PDSTDEKPLFPPSYKHGPREMDIMSKLERLPEILSSAESADSKSEALKKINMAFGNRVTNSELIVLAK

The query sequence (length=388) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4u03:A 389 389 0.9948 0.9923 0.9923 0.0 4txy:A, 4txz:A, 4ty0:A, 4u03:B, 4u0m:A, 4u0m:B, 4u0n:A, 4u0n:B, 4xj4:A
2 4xj3:A 369 388 0.9407 0.9892 0.9407 0.0 4txy:B, 4txz:B, 4ty0:B, 4xj5:A
3 4xj6:A 370 383 0.6160 0.6459 0.6240 1.01e-172
4 7ljo:A 290 275 0.1881 0.2517 0.2655 8.74e-06
5 7ocn:A 690 102 0.0773 0.0435 0.2941 0.33 7ocn:B, 7ocp:A, 7ocp:B, 7ocq:A, 7ocq:B, 7ocr:A, 7ocr:B, 7ocs:A, 7ocs:B, 7ocs:C, 7ocs:D, 7oct:A, 7oct:B, 7ocu:A, 7ocu:B
6 1w2t:A 432 109 0.0747 0.0671 0.2661 1.8 1w2t:B, 1w2t:C, 1w2t:D, 1w2t:E, 1w2t:F
7 7bqz:A 215 70 0.0412 0.0744 0.2286 2.5 7bqz:C, 7bqz:E, 7bqz:G, 7bu9:A, 7bu9:C, 7bu9:E, 7bu9:G, 7cna:D, 7cna:A, 7e9m:A, 7e9m:C, 7ea1:A, 8gtx:A, 4h75:A, 5jsg:A, 5jsg:B, 5jsj:A, 5jsj:B, 4mzf:B, 4mzg:B, 4mzg:D, 4mzh:A, 2ns2:A, 7ocb:B, 5y5w:A, 5y5w:C
8 7amv:K 708 41 0.0361 0.0198 0.3415 3.4 8c8h:K, 6rfl:K
9 2y27:B 427 44 0.0438 0.0398 0.3864 3.9 2y27:A, 2y4n:A, 2y4n:B
10 7pug:A 829 106 0.0696 0.0326 0.2547 5.1 7pxq:A
11 4oau:C 692 92 0.0644 0.0361 0.2717 5.3 4g8l:A, 4g8l:B, 4g8l:C, 4g8l:D, 4oav:B, 4oav:D, 1wdy:A
12 7a19:A 339 49 0.0387 0.0442 0.3061 8.6 7a19:B, 7a1a:A, 7a1a:B, 7wjr:A, 7wjr:B, 7wjr:C, 7wjr:D, 7wkl:A, 7wkl:B, 7wkl:C, 7wkl:D, 7wkm:A, 7wkm:B, 7wmb:A, 7wmb:B
13 1zq1:A 437 85 0.0464 0.0412 0.2118 9.2 1zq1:B
14 8e4i:B 769 47 0.0361 0.0182 0.2979 9.3 8e3j:A, 8e3j:B, 8e3p:A, 8e3p:B, 8e4i:A, 8e4k:A, 8e4k:B, 8e4z:A, 8e4z:B, 8e5u:A, 8e5u:B, 8e6g:A, 8e6g:B, 8ecw:A, 8ecw:B, 8egv:A, 8egv:B, 8ehp:A, 8ehp:B, 8eid:A, 8eid:B, 8ekn:A, 8ekn:B, 8ele:A, 8ele:B, 8epj:A, 8epj:B, 8epo:A, 8epo:B, 8epr:A, 8epr:B, 8eq7:A, 8eq7:B, 8eqx:A, 8eqx:B, 8er4:A, 8er4:B, 8etl:A, 8etl:B, 8eto:A, 8eto:B, 8eud:A, 8eud:B, 8eur:A, 8eur:B, 8eut:A, 8eut:B, 8eux:A, 8eux:B, 7r6j:A, 7r6j:B, 7rd2:A, 7rd2:B, 7rev:A, 7rev:B, 7t66:A, 7t66:B, 7t68:A, 7t68:B, 7t8v:A, 7t8v:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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