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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTWHILGAGSLGSLWAARLGRAGLPVRLILRDRQRLRRYQQAGGLSLVEDGQASLYPIAAETPDGGQPIQRLLLACKAYD
AEEAASSVAHRLAGNAELLLLQNGLGSQQAVAARLPRSRCLFASSTEGAFRDGDFRVVFAGRGHTWLGDPRDTNAPAWLT
QLSQAGIPHSWSDDILERLWRKLALNCAINPLTVLHDCRNGGLRQHPEEIAALCDELGQLLHASGYDAAARSLLEDVRAV
IDATAANYSSMHQDVTRGRRTEIGYLLGYACQHGQRLGLPLPRLGTLLARLQAHLRQRGLPDR

The query sequence (length=303) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6k1r:A 305 303 1.0000 0.9934 1.0000 0.0 6k1r:B, 6k1r:C, 5zix:A, 5zix:B
2 2ofp:B 294 299 0.3333 0.3435 0.3378 1.12e-44 2ofp:A, 1yjq:A, 1yon:A
3 5ayv:B 303 302 0.2937 0.2937 0.2947 1.20e-25 5ayv:A, 5hws:A, 5hws:B, 5hws:C, 5hws:D
4 3hwr:A 299 323 0.2970 0.3010 0.2786 7.66e-18 3hwr:B
5 5x20:A 312 311 0.2376 0.2308 0.2315 3.68e-16 3wfj:A, 3wfj:B, 3wfj:C, 3wfj:D, 3wfj:E, 3wfj:G, 5x20:B, 5x20:C, 5x20:D, 5x20:E
6 3wfj:F 263 239 0.1848 0.2129 0.2343 3.83e-09 3wfj:H
7 8ix9:C 314 300 0.2343 0.2261 0.2367 3.39e-07 8ix9:B, 8ix9:A, 8ixh:A, 8ixh:B, 8ixh:C, 8ixm:A, 8ixm:B
8 6c6r:A 451 50 0.0693 0.0466 0.4200 0.36 6c6n:A, 6c6n:B, 6c6p:A, 6c6p:B, 6c6r:B
9 4ol9:A 297 212 0.1749 0.1785 0.2500 0.53
10 5zss:A 388 45 0.0462 0.0361 0.3111 0.72
11 3hdi:A 414 58 0.0660 0.0483 0.3448 0.73 3hdi:B
12 3k6j:A 430 34 0.0396 0.0279 0.3529 1.2
13 3rzf:A 541 196 0.1386 0.0776 0.2143 2.0
14 7v09:A 403 54 0.0693 0.0521 0.3889 2.3 7v09:B
15 8aaf:a 848 64 0.0594 0.0212 0.2812 3.0 8agt:a, 8agu:a, 8agv:a, 8agw:a, 8agx:a, 8agz:a
16 5xxb:G 233 60 0.0594 0.0773 0.3000 3.2
17 6vhy:C 540 67 0.0660 0.0370 0.2985 6.5 6vhv:A, 6vhw:A, 6vhw:B, 6vhx:A, 6vhx:B, 6vhy:D, 6vhy:A, 6vhy:B, 6vhz:A, 6vhz:B
18 3f3s:A 312 85 0.0825 0.0801 0.2941 8.4 3f3s:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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