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BioLiP
>protein
MTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN

The query sequence (length=40) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1m9o:A 40 40 1.0000 1.0000 1.0000 3.22e-24
2 1rgo:A 70 34 0.6250 0.3571 0.7353 2.33e-13
3 1rgo:A 70 35 0.4250 0.2429 0.4857 4.90e-07
4 6nzl:A 78 34 0.4500 0.2308 0.5294 5.85e-07
5 6nzl:A 78 31 0.3500 0.1795 0.4516 6.42e-06
6 6pmg:X 35 30 0.3000 0.3429 0.4000 7.66e-04
7 7dvq:M 191 25 0.2500 0.0524 0.4000 0.023 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M
8 6ff4:t 172 25 0.2500 0.0581 0.4000 0.025 8ch6:Z, 6ff7:t, 7qtt:Z
9 7dco:M 176 31 0.2250 0.0511 0.2903 0.032 5gm6:a
10 7yb9:A 430 31 0.3750 0.0349 0.4839 0.13 7bmi:A, 7bmj:A, 7bmj:C, 7e6j:A, 5jqy:A, 5jtc:A, 5jz6:A, 5jz8:A, 5jza:A, 5jzu:A, 6q9f:A, 6q9i:A, 6rk9:A, 6rk9:B, 7yb8:A, 7yba:A, 7ybb:A, 7ybc:A, 6yyu:A, 6yyv:A, 6yyw:A, 6yyx:A, 6yyy:A, 6z6q:A, 6z6r:A
11 8y6o:V 101 20 0.2000 0.0792 0.4000 0.23
12 4ii1:B 139 23 0.2750 0.0791 0.4783 0.38 4ii1:A, 4ii1:C, 4ii1:D
13 2fc6:A 50 28 0.2000 0.1600 0.2857 0.73
14 2d9m:A 69 28 0.3000 0.1739 0.4286 0.83
15 5elh:A 142 35 0.3750 0.1056 0.4286 0.94 5elh:B
16 8cmk:A 913 32 0.3500 0.0153 0.4375 2.5 8cmk:B, 6gx9:A, 6gx9:B
17 2cqe:A 98 20 0.2000 0.0816 0.4000 2.8
18 5elk:A 121 25 0.2500 0.0826 0.4000 3.1
19 8c6j:F 122 15 0.2000 0.0656 0.5333 4.1
20 6kls:C 236 26 0.2750 0.0466 0.4231 4.2 6kls:F, 6klv:C, 6klv:F
21 2i2x:A 459 26 0.2250 0.0196 0.3462 5.0 2i2x:C, 2i2x:E, 2i2x:G, 2i2x:I, 2i2x:K, 2i2x:M, 2i2x:O
22 2wle:C 211 27 0.2500 0.0474 0.3704 6.3 2wle:A, 2wle:B, 2wlf:A, 2wlf:C, 2wlf:B, 2wlg:A, 2wlg:C, 2wlg:B
23 4cs7:C 172 17 0.1750 0.0407 0.4118 7.3 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E
24 7ndj:B 192 12 0.1500 0.0312 0.5000 8.8 7ndi:B, 6sjd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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