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BioLiP
>protein
MTSFYKITAYNSQALYFWGTDADVDRYVDWLNRDREINVYAAEAIPEAEWAQYEGRDDVLSGEECGWDDF

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8g9t:A 70 70 1.0000 1.0000 1.0000 1.54e-47
2 8ysx:C 200 40 0.1857 0.0650 0.3250 1.3 8ysx:D, 8yvg:C, 8yvg:D
3 7awe:L 203 40 0.1714 0.0591 0.3000 1.8 6avo:C, 6avo:D, 7awe:Z, 7b12:L, 7b12:Z, 6e5b:K, 6e5b:Y, 3unf:K, 3unf:Y
4 7lyt:A 712 38 0.1714 0.0169 0.3158 2.4 7lys:A, 7m5o:A
5 6a4r:A 235 39 0.2000 0.0596 0.3590 3.3 6a4r:B
6 8fmw:AC 221 20 0.1286 0.0407 0.4500 3.3
7 1w07:B 658 38 0.1714 0.0182 0.3158 3.7 1w07:A
8 7cep:A 414 36 0.1143 0.0193 0.2222 9.0 7ceo:A, 7cer:A, 7ces:A, 7e6b:A, 7e6c:A, 7e6e:A, 7e6f:A, 5j8q:A, 6kfz:A, 7xej:A, 7xek:A, 7xen:A, 7xep:A, 7xet:A, 5xt5:A, 5xt5:B, 5xt6:A, 5xt6:B, 5zsk:A, 5zso:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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