Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MTRLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQL
LELFDLGKYFIQREIYPGSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMSLQTLTQGLETFAKA
QAGL

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1u7p:A 164 164 1.0000 1.0000 1.0000 1.92e-122 1u7p:B, 1u7p:C, 1u7p:D
2 8pno:A 202 110 0.1585 0.1287 0.2364 0.017 2b0c:A, 8pne:A, 8pno:B
3 3duw:A 220 83 0.1341 0.1000 0.2651 1.1 3duw:B
4 8gs8:A 614 108 0.1768 0.0472 0.2685 2.0 3abv:A, 3ae1:A, 3ae2:A, 3ae3:A, 3ae4:A, 3ae5:A, 3ae6:A, 3ae7:A, 3ae8:A, 3ae9:A, 3aea:A, 3aeb:A, 3aec:A, 3aed:A, 3aee:A, 3aef:A, 3aeg:A, 8dyd:A, 8dye:A, 2fbw:A, 2fbw:N, 2h88:A, 2h88:N, 2h89:A, 6myo:A, 6myp:A, 6myq:A, 6myr:A, 6mys:A, 6myt:A, 6myu:A, 3sfd:A, 3sfe:A, 6vax:A, 6vax:C, 2wqy:A, 2wqy:N, 1yq3:A, 1yq4:A, 4ytp:A, 4yxd:A, 1zoy:A, 1zp0:A
5 7tm7:A 802 78 0.1341 0.0274 0.2821 2.2 7tm7:B
6 3swg:A 417 38 0.0732 0.0288 0.3158 2.4 2yvw:A
7 6xn1:B 333 46 0.0915 0.0450 0.3261 3.5 6xn1:A, 6xn2:B, 6xn2:A
8 4gox:A 275 51 0.1037 0.0618 0.3333 3.8
9 6iso:I 248 26 0.0732 0.0484 0.4615 4.6
10 6w04:A 223 116 0.1707 0.1256 0.2414 8.8

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218