Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTRIASHRGGTLEFGDSTPHGFTATAAMALEEVEFDLHPTADGAIVVHHDPTLDATTDMTGAIVDMTLAKVKTATIRYGA
GSHPMTLEELCALYVDSHVNFRCEIKPGVDGLPYEGFVALVIAGLERHSMLERTTFSSFLLASMDELWKATTRPRLWLVS
PSVLQQLGPGAVIETAIAHSIHEIGVHIDTADAGLMAQVQAAGLDFGCWAAHTPSQITKALDLGVKVFTTDRPTLAIALR
TEHRME

The query sequence (length=246) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ks6:A 250 246 1.0000 0.9840 1.0000 0.0 3ks5:A, 3ks5:B, 3ks6:B, 3ks6:C, 3ks6:D
2 2pz0:B 243 243 0.2642 0.2675 0.2675 1.57e-16 2pz0:A
3 4oec:A 248 87 0.1260 0.1250 0.3563 1.08e-09 4oec:B, 4oec:C, 4oec:D
4 5t9c:E 263 140 0.1707 0.1597 0.3000 2.14e-08 5t91:A, 5t9b:G
5 2oog:D 268 195 0.2114 0.1940 0.2667 3.15e-07 2oog:A, 2oog:B, 2oog:C, 2oog:E, 2oog:F
6 4r7o:C 280 151 0.1667 0.1464 0.2715 6.26e-07 4r7o:A, 4r7o:B, 4r7o:D, 4r7o:E, 4r7o:F, 4r7o:G
7 3l12:A 297 274 0.3089 0.2559 0.2774 1.10e-06 3l12:B
8 8ghh:A 276 151 0.1626 0.1449 0.2649 1.36e-06 8ghi:A
9 3qvq:A 251 245 0.2398 0.2351 0.2408 3.16e-06 3qvq:B, 3qvq:C, 3qvq:D
10 7ym0:A 301 66 0.0935 0.0764 0.3485 4.00e-05 7ym0:B, 7ymr:A, 7ymr:B, 7ymr:C, 7ymr:D
11 7e2b:A 253 90 0.0976 0.0949 0.2667 4.11e-05
12 3no3:A 238 241 0.2195 0.2269 0.2241 6.88e-05
13 5vug:A 268 112 0.1138 0.1045 0.2500 0.17
14 8cwp:A 327 82 0.0935 0.0703 0.2805 0.74
15 7ww4:A 480 238 0.2073 0.1062 0.2143 0.75 7wwc:A
16 6jij:C 298 51 0.0691 0.0570 0.3333 0.97 6jij:B, 6jij:A
17 5gjo:A 385 102 0.1098 0.0701 0.2647 0.98 5gjn:A, 5gjo:B, 5gjp:A
18 6kfs:A 248 62 0.0772 0.0766 0.3065 1.8
19 6ik5:A 705 32 0.0447 0.0156 0.3438 4.5 6ik5:B, 6ik6:A, 6ik6:B, 6ik7:B, 6ik7:A, 6ik8:B, 6ik8:A, 3w5f:A, 3w5g:A, 3w5g:B
20 9eoc:B 485 59 0.0894 0.0454 0.3729 4.8
21 5dw8:A 260 36 0.0569 0.0538 0.3889 5.2 5dw8:B, 5j16:A, 5j16:B, 5j16:C, 5j16:D
22 3d23:B 301 39 0.0569 0.0465 0.3590 5.6 3d23:A, 3d23:C, 3d23:D
23 4i58:A 451 28 0.0569 0.0310 0.5000 5.7 4i58:B, 4i58:C, 4i58:D, 4i59:A, 4i59:B, 4i59:C, 4i59:D
24 1t8q:B 329 90 0.0976 0.0729 0.2667 5.9 1t8q:A, 1t8q:C, 1t8q:D, 1ydy:A, 1ydy:B
25 5u8u:D 477 56 0.0854 0.0440 0.3750 7.0 1lpf:A, 1lpf:B, 5u8u:A, 5u8u:B, 5u8u:C, 5u8v:A, 5u8v:B, 5u8v:C, 5u8v:D, 5u8w:A, 5u8w:B, 5u8w:C, 5u8w:D
26 1rv8:B 305 37 0.0528 0.0426 0.3514 7.6 1rv8:A, 1rv8:C, 1rv8:D, 1rvg:A, 1rvg:B, 1rvg:C, 1rvg:D
27 8tjg:A 250 28 0.0528 0.0520 0.4643 8.0

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218