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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTRDFKPGDLIFAKMKGYPHWPARVDEVPPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEID
NNPKVK

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8cbn:L 86 86 1.0000 1.0000 1.0000 2.26e-59 8cbn:K, 8cbq:K, 8pc5:K, 8pc6:L, 8pc6:K, 8peo:K, 8pep:L, 8pep:K, 6s01:K
2 6iit:B 100 89 0.7907 0.6800 0.7640 1.08e-45 6iiq:A, 6iiq:B, 6iir:A, 6iir:B, 6iis:B, 6iis:A, 6iit:A
3 5xsk:A 90 89 0.7442 0.7111 0.7191 1.64e-44
4 3qj6:A 90 84 0.7791 0.7444 0.7976 1.73e-44 3qby:B
5 6kcp:B 84 80 0.3837 0.3929 0.4125 1.12e-15 6kco:O, 6kco:F, 6kco:M, 6kco:E, 6kco:P, 6kco:B, 6kco:H, 6kco:D, 6kco:I, 6kco:N, 6kco:G, 6kco:J, 6kco:L, 6kco:A, 6kco:C, 6kco:K
6 4n4g:A 209 35 0.1744 0.0718 0.4286 0.002 4n4h:A, 4n4i:A, 4ns5:A
7 5b73:A 313 74 0.2209 0.0607 0.2568 0.014 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
8 9exy:B 135 25 0.1279 0.0815 0.4400 0.062 6ue6:C, 6ue6:F
9 5ciu:B 121 35 0.1279 0.0909 0.3143 0.065
10 9exw:A 148 25 0.1279 0.0743 0.4400 0.072 9exw:B, 9exx:A, 9exx:B, 9exy:A, 7lmt:A, 7lmt:H, 7lmt:B, 7lmt:C, 7lmt:D, 7lmt:E, 7lmt:F, 7lmt:G, 7mdn:A, 7mdn:H, 7mdn:B, 7mdn:C, 7mdn:D, 7mdn:E, 7mdn:F, 7mdn:G, 6ue6:A, 6ue6:B, 6ue6:D, 6ue6:E, 6ue6:G, 6ue6:H, 5vc8:A, 7vln:B, 6xcg:A, 6xcg:B, 6xcg:C
11 5nrr:B 137 23 0.1279 0.0803 0.4783 0.080 5ciu:A, 5nr3:A, 5nr3:B, 5nrr:A, 5nrs:A, 5nrs:B, 5nrv:D, 5nrv:A, 5nv0:A, 5nv0:B, 5nv2:A, 5nv2:B, 5nv7:A, 5nv7:B, 6r3e:A
12 6g2b:A 123 68 0.2209 0.1545 0.2794 0.100 6g24:A, 6g25:A, 6g27:A, 6g29:A, 6g2c:A, 6g2e:A, 6g2f:A, 6g2o:A
13 7x0l:A 409 24 0.1395 0.0293 0.5000 0.73 7x0j:A, 7x0j:B, 7x0k:A, 7x0k:B, 7x0l:B, 7x0m:A, 7x0m:B, 7x0n:A, 7x0n:B
14 7lh9:C 107 37 0.1512 0.1215 0.3514 1.9 4z02:B
15 3mo8:A 127 17 0.1047 0.0709 0.5294 2.4 5c6s:A, 2x4w:A, 2x4x:A, 2x4x:C, 2x4x:E, 2x4x:G, 2x4y:A, 2x4y:C, 2x4y:E, 2x4y:G, 2x4y:I, 2x4y:K, 2x4y:M, 2x4y:O
16 3fai:A 227 52 0.2209 0.0837 0.3654 2.4 3f9o:A, 2gkl:A, 3iof:A, 3iog:A, 2qds:A, 1x8g:A, 1x8h:A, 1x8i:A
17 4oqy:A 268 65 0.2326 0.0746 0.3077 2.7
18 3cx5:O 248 50 0.1860 0.0645 0.3200 4.4 3cx5:D, 3cxh:O, 3cxh:D, 8e7s:L, 8e7s:l, 8ec0:L, 8ec0:l, 1ezv:D, 6giq:D, 6giq:O, 6hu9:D, 6hu9:O, 2ibz:D, 1kb9:D, 1kyo:D, 1kyo:O, 1p84:D, 4pd4:D, 6t0b:D, 6t0b:O, 6t15:D, 6t15:O, 6ymx:D, 6ymx:O
19 7e29:A 496 21 0.1163 0.0202 0.4762 5.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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