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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MTPQLQQAIRLLQLSTLELQQELQQALESNPLLEEELPVYQGETTQTLQDYLMWQVELTPFTDTDRAIATSIVDAVDDTG
YLTIQIEDIVDSIGDDEIGLEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFAKETPWLEEARLIISDHLDLLANHDF
RTLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKVSGRWTVELNADSIPRLKINQQYAAMGNSARN
DADGQFIRSNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS
PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSMLSEQGIMVARRTVAKYRESLSIPPSNQ
RKQLV

The query sequence (length=405) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7qv9:M 417 405 0.9951 0.9664 0.9951 0.0 8f1i:M, 8f1j:M, 8f1k:M, 7qwp:M, 7qxi:M, 8re4:M, 8rea:M
2 8reb:M 350 367 0.8099 0.9371 0.8937 0.0 8rec:M, 8red:M, 8ree:M
3 5nss:M 388 364 0.7111 0.7423 0.7912 0.0 6gfw:M, 6gh5:M, 5nsr:M
4 6gh6:M 315 359 0.6642 0.8540 0.7493 0.0
5 5ui5:V 323 342 0.2395 0.3003 0.2836 3.88e-35 2o8k:A, 2o9l:A, 5ui5:I
6 4u33:A 661 55 0.0519 0.0318 0.3818 0.42 4u33:B, 4u33:C, 4u33:D, 4u33:E, 4u33:F, 4u3c:A, 4u3c:B, 4u3c:C, 4u3c:D, 4u3c:E, 4u3c:F
7 3pfe:A 471 47 0.0370 0.0318 0.3191 1.1
8 5cim:B 675 53 0.0469 0.0281 0.3585 1.8 5cgm:A, 5cgm:B
9 8q4d:D 373 40 0.0420 0.0456 0.4250 2.3 8b4h:A, 8b4h:B, 8b4h:C, 8b4h:D, 8q4d:A, 8q4d:B, 8q4d:C
10 7c8j:A 707 55 0.0321 0.0184 0.2364 3.3 7c8k:A, 8k4u:B, 8u0t:A, 7xa7:A, 7xa7:C, 7xa7:E, 7xa7:G
11 8eyt:W 254 32 0.0321 0.0512 0.4062 4.0 4adv:V, 7afo:Y, 7o5h:V
12 3k2h:A 503 101 0.0691 0.0557 0.2772 5.8 3k2h:B, 3kjr:A, 3kjr:B, 3nrr:A, 3nrr:B
13 1lbg:A 357 111 0.0691 0.0784 0.2523 6.5 2bjc:A, 2bjc:B, 1cjg:A, 1cjg:B, 1efa:A, 1efa:B, 1efa:C, 1jwl:B, 1jwl:A, 1jwl:C, 2kei:A, 2kei:B, 2kej:A, 2kej:B, 2kek:A, 2kek:B, 1l1m:A, 1l1m:B, 1lbg:D, 1lbh:A, 1lbh:B, 1lbh:C, 1lbh:D, 1lcc:A, 1lcd:A, 1osl:A, 1osl:B, 2p9h:A, 2p9h:B, 2paf:A, 2paf:B, 2pe5:A, 2pe5:B, 2pe5:C, 4rzt:A, 4rzt:B, 4rzt:C, 4rzt:D, 1tlf:A, 1tlf:B, 1tlf:C, 1tlf:D
14 2nya:A 791 76 0.0568 0.0291 0.3026 7.7 2nya:F
15 7pw9:A 1952 30 0.0247 0.0051 0.3333 9.0 7pw4:A, 7pw5:A, 7pw6:A, 7pw7:A, 7pw8:A, 6z3r:A
16 6syt:A 1896 30 0.0247 0.0053 0.3333 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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