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BioLiP
>protein
MTNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKI
DAGYHGNLGINIKNEHEDDKMQTIFLRNIDNEKIFEKERHLYKLGSYRIEKGERIAQLVIVPIWTPELKQVEEFESVERG
EKGFGSS

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5cct:A 169 167 0.9820 0.9704 0.9820 2.59e-118 5cco:A, 5nyz:A, 5nz2:A, 3zez:A, 3zf0:A, 3zf1:A, 3zf4:A, 3zf5:A, 3zf6:A
2 4wrk:A 158 157 0.7186 0.7595 0.7643 1.87e-79 4gv8:A, 4gv8:C, 4gv8:B, 4gv8:D, 4gv8:F, 4gv8:E, 4wrk:B, 4wrk:C, 4wrk:D, 4wrk:E, 4wrk:F
3 6mjk:A 144 163 0.3234 0.3750 0.3313 2.70e-28
4 6ljj:A 150 155 0.2934 0.3267 0.3161 3.06e-23 3ara:A, 3ara:C, 3ara:B, 3arn:A, 3arn:C, 3arn:B, 3ehw:A, 3ehw:B, 3ehw:C, 3ehw:X, 3ehw:Y, 3ehw:Z, 5h4j:A, 2hqu:A, 2hqu:B, 2hqu:C
5 4oop:B 142 163 0.3054 0.3592 0.3129 1.73e-22 4oop:A, 4oop:C
6 4gcy:A 163 169 0.3234 0.3313 0.3195 6.27e-20 8cga:A, 5ect:A, 5edd:A, 3h6d:A, 3hza:A, 3i93:A, 3loj:A, 2py4:A, 1six:A, 1sjn:A, 1sjn:C, 1sjn:B, 1sm8:A, 1sm8:B, 1sm8:C, 1smc:A, 1smc:B, 1smc:C, 1snf:A, 1snf:C, 1snf:B
7 5f9k:B 130 154 0.2814 0.3615 0.3052 7.13e-20 5f9k:A, 5f9k:C
8 6hde:B 152 176 0.3054 0.3355 0.2898 5.86e-17 1eu5:A, 1euw:A, 6hde:A, 6hde:C, 2hrm:A, 1rn8:A, 1rnj:A, 1seh:A, 1syl:A
9 2ol1:C 125 144 0.2695 0.3600 0.3125 7.78e-17 2oke:A, 2oke:C, 2oke:B, 2ol1:A, 2ol1:B
10 3f4f:A 138 162 0.2455 0.2971 0.2531 3.46e-16 3f4f:B, 3f4f:C, 3p48:A, 3p48:C, 3p48:B
11 1f7r:A 133 144 0.2814 0.3534 0.3264 1.60e-15 1f7k:A, 1f7k:B, 1f7n:A, 1f7n:B, 1f7p:A, 1f7p:C, 1f7p:B, 1f7q:A, 1f7q:C, 1f7q:B
12 8hrv:B 145 165 0.2096 0.2414 0.2121 4.60e-12 8hrv:A, 8hrv:C
13 5y5p:D 171 110 0.2096 0.2047 0.3182 2.48e-10 5y5p:A, 5y5p:B, 5y5p:C, 5y5p:E, 5y5p:F, 5y5q:A, 5y5q:B, 5y5q:C
14 2y8c:C 136 164 0.2635 0.3235 0.2683 1.21e-08 2y8c:B
15 3t64:A 153 178 0.2874 0.3137 0.2697 1.93e-08 3t60:A, 3t60:B, 3t60:C, 3t64:B, 3t64:C, 3t6y:A, 3t6y:B, 3t6y:C, 3t70:A, 3t70:B, 3t70:C, 1vyq:A, 1vyq:B, 1vyq:C, 2y8c:A
16 7n6s:C 147 156 0.2335 0.2653 0.2500 6.24e-08 7n6s:A, 7n6s:B, 7n6s:F, 7n6s:D, 7n6s:E
17 6mao:A 137 160 0.2335 0.2847 0.2437 2.28e-06
18 4aoo:A 143 144 0.2575 0.3007 0.2986 3.78e-04 4ao5:A, 4ao5:B, 4ao5:C, 4ao5:D, 4ao5:E, 4ao5:F, 4aoo:B, 4aoo:C, 4aoo:D, 4aoz:A, 4aoz:B, 4aoz:C, 4apz:1, 4apz:Y, 4apz:2, 4apz:3, 4apz:4, 4apz:5, 4apz:7, 4apz:6, 4apz:8, 4apz:9, 4apz:a, 4apz:A, 4apz:C, 4apz:B, 4apz:D, 4apz:E, 4apz:F, 4apz:G, 4apz:I, 4apz:H, 4apz:J, 4apz:K, 4apz:L, 4apz:M, 4apz:N, 4apz:O, 4apz:P, 4apz:R, 4apz:Q, 4apz:S, 4apz:U, 4apz:T, 4apz:V, 4apz:W, 4apz:X, 4apz:Z, 4apz:b, 4apz:d, 4apz:c, 4apz:e, 4apz:g, 4apz:f, 4apz:h, 4apz:j, 4apz:i, 4apz:k, 4apz:m, 4apz:l, 4b0h:A, 4b0h:B, 4b0h:C, 2xce:A, 2xce:B, 2xce:C, 2xce:D, 2xce:E, 2xce:F, 2xy3:A, 2xy3:B, 2xy3:C, 2xy3:D, 2xy3:E, 2xy3:F
19 6lj3:A 164 80 0.1437 0.1463 0.3000 0.20 6ky9:A, 6ky9:B, 6ky9:C, 6kz6:C, 6kz6:B, 6kz6:A, 6lis:A, 6lis:B, 6lis:C, 6lis:D, 6lis:F, 6lis:E, 6lj3:C, 6lj3:B
20 1jda:A 418 56 0.1078 0.0431 0.3214 0.81 2amg:A, 1gcy:A, 6iwk:A, 6iyg:A, 6j3x:A, 1jdc:A, 1jdd:A, 6jqb:A, 1qi3:A, 1qi4:A, 1qi5:A, 1qpk:A
21 2bt1:A 254 62 0.0958 0.0630 0.2581 1.1 2bsy:A, 2we0:A, 2we1:A, 2we2:A, 2we3:A
22 6n7j:L 214 40 0.0659 0.0514 0.2750 1.6
23 7vo5:A 276 47 0.0898 0.0543 0.3191 3.6
24 8i0w:J 571 48 0.0958 0.0280 0.3333 4.2 7dvq:J, 8i0u:J, 8i0v:J, 6icz:J, 6id0:J, 6id1:J, 6qdv:S, 7w59:J, 7w5a:J, 7w5b:J, 5xjc:J, 5yzg:J, 5z56:J, 5z57:J, 5z58:J
25 8oo6:A 604 88 0.1377 0.0381 0.2614 6.4 1d8y:A, 1d9d:A, 1d9f:A, 1kfs:A, 2kfn:A, 2kfz:A, 1kln:A, 1krp:A, 1ksp:A, 2kzm:A, 2kzz:A, 8ooy:A, 1qsl:A
26 1kfd:A 560 88 0.1377 0.0411 0.2614 7.3
27 6n9u:H 645 76 0.1437 0.0372 0.3158 8.8 6n9v:H, 6n9w:H, 6n9x:H, 6p7e:D
28 7mfm:G 1483 37 0.0778 0.0088 0.3514 8.8 7mfm:H, 7mft:G
29 6v59:A 419 29 0.0719 0.0286 0.4138 9.6 6nx0:A, 6v59:B
30 8c6j:S 635 40 0.0838 0.0220 0.3500 9.9 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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