Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTNKVLTISSYVCSGFVGNRCGMIILDSFQIQSIFVLTTHLANHTGYPVVGGSGVLLNDFISIMDSLEVNHLDKDIEFLV
TGYFPSSDLVYETINRVKRIKDNKKVYFLCDPILGDNGKMYTKSEVQDSMKELIKYADIITPNATELSFLTGLEVNSVSE
AIKACHILHEQGIPVILVTSIKEGNDIILLCSFKDTLNNKNFTIKIPRIEGDFTGVGDTLTYILLSWIIKGIPLEHAVNR
AISTLQTILRNTVGTAEINIINCIPYLKGTEESFTITYILEHHHHHH

The query sequence (length=287) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4s1h:A 287 287 1.0000 1.0000 1.0000 0.0 4s1h:B, 4s1i:A, 4s1i:B
2 6k8z:B 298 259 0.3031 0.2919 0.3359 3.55e-48 6k8z:A, 6k90:A, 6k90:B, 6k91:A, 6k91:B, 6k92:A, 6k92:B
3 3zs7:A 277 269 0.2822 0.2924 0.3011 1.49e-37
4 1rfu:A 312 272 0.2578 0.2372 0.2721 1.36e-30 1lhr:A, 1lhr:B, 1rft:A, 1rfu:B, 1rfu:C, 1rfu:D, 1rfu:E, 1rfu:F, 1rfu:G, 1rfu:H, 1rfv:A, 1rfv:B, 1ygj:A, 1ygk:A, 1yhj:A
5 4en4:A 310 272 0.2648 0.2452 0.2794 2.24e-30 2ajp:A, 2ajp:B, 4en4:B, 4eoh:A, 4eoh:B, 3fhx:A, 3fhx:B, 3fhy:A, 3fhy:B, 3keu:A, 3keu:B, 8wr2:A, 8wr2:B, 2yxt:A, 2yxt:B, 2yxu:A, 2yxu:B
6 6yk0:A 309 271 0.2578 0.2395 0.2731 4.23e-30 6yk0:B, 6yk0:C, 6yk0:D, 6yk1:A, 6yk1:B, 6yk1:C, 6yk1:D
7 6su9:A 295 285 0.2822 0.2746 0.2842 3.98e-28 6su9:B
8 3mbh:A 290 236 0.2334 0.2310 0.2839 4.59e-20 3mbh:B, 3mbh:C, 3mbh:D, 3mbh:E, 3mbh:F, 3mbj:A
9 1td2:A 287 287 0.2300 0.2300 0.2300 1.16e-14 1td2:B
10 2ddo:A 263 257 0.2195 0.2395 0.2451 1.67e-14 2ddw:A, 2ddw:B
11 5b6a:A 288 271 0.2300 0.2292 0.2435 4.85e-14
12 5zwb:A 271 255 0.1986 0.2103 0.2235 1.09e-12 5zw9:A, 5zwa:A, 5zwa:B
13 3hyo:A 273 153 0.1568 0.1648 0.2941 2.95e-11 3ibq:A
14 4xck:A 306 107 0.1254 0.1176 0.3364 1.32e-08 4xck:B, 4xck:C, 4xck:D, 4xda:A, 4xda:B, 4xda:C, 4xda:D
15 1gqt:B 307 104 0.1185 0.1107 0.3269 2.57e-08 1gqt:A, 1gqt:C, 1gqt:D, 1rk2:A, 1rk2:B, 1rk2:C, 1rk2:D, 1rkd:A, 1rks:A
16 2i5b:A 269 191 0.1638 0.1747 0.2461 6.21e-06 2i5b:C, 2i5b:D, 2i5b:B, 2i5b:E
17 6ils:B 313 123 0.1254 0.1150 0.2927 4.05e-04 6ils:A, 6ilt:A, 6ilt:B
18 3in1:A 312 126 0.1080 0.0994 0.2460 0.001 3in1:B
19 7l07:A 214 180 0.1429 0.1916 0.2278 0.008
20 4ywr:A 228 81 0.0871 0.1096 0.3086 0.013
21 4c5k:D 276 95 0.0871 0.0906 0.2632 0.017 4c5k:A, 4c5k:B, 4c5k:C, 4c5l:A, 4c5l:B, 4c5l:C, 4c5l:D, 4c5m:A, 4c5m:B, 4c5m:C, 4c5m:D, 4c5n:A, 4c5n:B, 4c5n:C, 4c5n:D
22 6a8a:A 327 114 0.0906 0.0795 0.2281 0.034 6a8a:B, 6a8b:A, 6a8b:B, 6a8c:A, 6a8c:B, 5zwy:A, 5zwy:B
23 4e84:A 313 128 0.1185 0.1086 0.2656 0.065 4e84:B, 4e8w:A, 4e8w:B, 4e8y:A, 4e8y:B, 4e8z:A, 4e8z:B
24 3kzh:A 316 151 0.1359 0.1234 0.2583 0.079 3kzh:B
25 5c41:A 317 149 0.1324 0.1199 0.2550 0.14 5byf:A, 5byf:B, 5c3y:A, 5c3y:B, 5c3y:C, 5c3y:D, 5c3y:E, 5c3y:F, 5c3y:G, 5c3y:H, 5c3y:I, 5c3y:J, 5c3y:K, 5c3y:L, 5c3z:A, 5c3z:B, 5c40:A, 5c40:B, 5c41:B, 5c41:C, 5c41:D, 2fv7:A, 2fv7:B, 6wjz:A, 6wjz:B, 6wk0:A, 6wk0:B, 6wk0:C, 6wk0:D
26 7w93:A 307 130 0.0871 0.0814 0.1923 0.15 7vsk:A, 7vte:A, 7vte:B, 7vte:C, 7vte:D, 7vtf:A, 7vtf:B, 7vtf:C, 7vtf:D, 7vtg:A, 7vtg:B, 7vtg:C, 7vtg:D, 7vva:A, 7vva:B, 7vva:C, 7vva:D
27 2dcn:A 308 42 0.0627 0.0584 0.4286 0.35 2dcn:B, 2dcn:C, 2dcn:D, 2dcn:E, 2dcn:F, 2dcn:G, 2dcn:H, 2dcn:I, 2dcn:J, 2dcn:K, 2dcn:L
28 5ygg:A 310 142 0.1220 0.1129 0.2465 0.35 5eyn:A, 5f0z:A, 5f11:A
29 2afb:A 329 66 0.0557 0.0486 0.2424 0.62
30 8g0h:D 475 152 0.1220 0.0737 0.2303 1.3 5a00:A, 7aab:A, 7aab:B, 7aac:A, 7aac:B, 7aad:A, 7aad:B, 6bhv:A, 6bhv:B, 6bhv:C, 6bhv:D, 7cmw:A, 7cmw:B, 4dqy:C, 4dqy:F, 5ds3:A, 8fyy:A, 8fyz:B, 8fyz:A, 8fz1:A, 8fz1:B, 8g0h:B, 6ghk:A, 6ghk:B, 3gjw:A, 3gn7:A, 4gv7:A, 4gv7:B, 4gv7:C, 4gv7:D, 5ha9:B, 8he7:A, 8he7:B, 4hhy:A, 4hhy:B, 4hhy:C, 4hhz:A, 4hhz:B, 4hhz:C, 8hlr:A, 8hlr:B, 8jnz:A, 8jnz:B, 7kk3:A, 7kk3:B, 7kk3:C, 7kk3:D, 7kk4:A, 7kk4:B, 7kk5:A, 7kk5:B, 7kk5:C, 7kk5:D, 7kk6:A, 7kk6:B, 5kpn:A, 5kpn:B, 5kpo:A, 5kpo:B, 5kpp:A, 5kpp:B, 5kpq:A, 5kpq:B, 3l3l:A, 3l3m:A, 4l6s:A, 4l6s:B, 6m3i:B, 6nrf:A, 6nrg:A, 6nrh:A, 6nri:A, 6nrj:A, 6ntu:A, 7onr:A, 7onr:B, 7ons:A, 7ons:B, 7ont:A, 7ont:B, 4opx:C, 4opx:F, 4oqa:C, 4oqa:F, 4oqb:C, 4oqb:F, 4pjt:A, 4pjt:B, 4pjt:C, 4pjt:D, 4r5w:A, 4r5w:B, 4r6e:A, 4r6e:B, 4r6e:C, 4r6e:D, 2rcw:A, 2rd6:A, 4rv6:A, 4rv6:B, 7s68:B, 7s6h:B, 7s6h:D, 7s6m:D, 7s6m:B, 7s81:C, 8u4w:A, 8u4w:B, 8u4w:C, 8u4w:D, 1uk0:A, 1uk0:B, 1uk1:A, 1uk1:B, 4und:A, 4und:B, 4uxb:B, 6vkk:A, 6vkk:D, 6vkk:C, 6vkk:B, 6vko:A, 6vko:B, 6vko:C, 6vko:D, 6vkq:A, 6vkq:B, 6vkq:C, 6vkq:D, 1wok:A, 1wok:B, 1wok:C, 1wok:D, 5wrq:A, 5wrq:B, 5wry:A, 5wry:B, 5wrz:A, 5wrz:B, 5ws0:A, 5ws0:B, 5ws1:A, 5ws1:B, 5wtc:A, 5wtc:B, 5xsr:A, 5xst:A, 5xsu:A, 5xsu:B, 5xsu:D, 6xvw:A, 6xvw:B, 4zzz:A, 4zzz:B
31 1ovm:A 535 64 0.0662 0.0355 0.2969 1.6 1ovm:B, 1ovm:C, 1ovm:D
32 7r8y:A 228 108 0.0871 0.1096 0.2315 1.9
33 3kou:B 238 64 0.0767 0.0924 0.3438 5.3 3ghh:B, 3kou:A, 3p5s:A, 3p5s:B
34 6m5u:A 585 67 0.0627 0.0308 0.2687 5.8 4iox:C, 6m5v:A
35 7x4t:A 298 52 0.0557 0.0537 0.3077 7.1 7x4q:A, 7x4q:B, 7x4t:B
36 7vg8:A 108 52 0.0592 0.1574 0.3269 7.4

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218