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BioLiP
>protein
MTMYIAFILSTIFVIGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATGDWV
IYDTGDSGFFSEEAMGIAALYSYGTWLVIVTGWSLLIGVVVIMEITRGN

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7v2d:m 129 129 1.0000 1.0000 1.0000 1.49e-84 7v2f:m, 7v2k:m, 7v30:m, 7v32:m, 7v3m:m, 7vbp:m, 7vy1:m, 7vye:m, 7vyi:m, 7vz8:m, 7w00:m, 7w0h:m, 7w1o:m, 7w31:m, 7w35:m, 7w4j:m, 7w4k:m, 7w4l:m, 7w4m:m, 7w4n:m, 7w4q:m
2 7v2c:m 175 175 1.0000 0.7371 0.7371 1.29e-75 7v2e:m, 7v2h:m, 7v2r:m, 7v33:m, 7vbl:m, 7vc0:m, 7vxs:m, 7vy9:m, 7vys:m, 7vzv:m, 7vzw:m, 7w0r:m, 7w0y:m, 7w1t:m, 7w1v:m, 7w1z:m, 7w20:m, 7w2r:m, 7w2u:m, 7w2y:m, 7w4c:m, 7w4d:m, 7w4e:m, 7w4f:m, 7w4g:m
3 5lnk:J 175 175 0.9535 0.7029 0.7029 1.72e-71
4 8esz:6 174 143 0.2791 0.2069 0.2517 8.60e-04
5 5c6p:A 459 60 0.1395 0.0392 0.3000 4.1 4huk:A, 4hum:A, 4hun:A
6 6raf:A 588 34 0.1008 0.0221 0.3824 4.5 6rag:A, 6rah:A, 6rai:A, 6raj:A, 6rak:A, 6ral:A, 6ram:A
7 6f0k:E 182 57 0.0930 0.0659 0.2105 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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