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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTLVKIGLWGGNGGSAQDISVPPKKLLGVTIYSSDAIRSIAFNYIGVDGQEYAIGPWGGGEGTSTEIKLGSSEHIKEISG
THGPVYDLADIVTYLKIVTSANNTYEAGVPNGKEFSIPLQDSGHVVGFFGRSGTLIDAIGIYVHP

The query sequence (length=145) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5gvy:A 145 145 1.0000 1.0000 1.0000 3.30e-102 5gvy:B, 5xfh:A
2 7v4s:A 143 143 0.4345 0.4406 0.4406 2.43e-34
3 6fly:A 144 143 0.3931 0.3958 0.3986 3.54e-30 6fly:B, 6flz:A, 6flz:B
4 4pit:B 144 144 0.3448 0.3472 0.3472 2.10e-16 2bmz:A, 2bmz:B, 2bn0:A, 2bn0:B, 8hyf:A, 3mit:A, 3mit:B, 3miu:A, 3miu:B, 3miv:B, 4pik:B, 4pik:C, 4pik:D, 4pik:A, 4pit:A, 4pit:C, 4pit:D, 1x1v:A, 1x1v:B
5 1zgs:A 442 147 0.3586 0.1176 0.3537 2.60e-14 4mq0:A, 1zgs:B
6 1zgs:A 442 148 0.3586 0.1176 0.3514 1.01e-12 4mq0:A, 1zgs:B
7 1zgs:A 442 151 0.3448 0.1131 0.3311 3.41e-11 4mq0:A, 1zgs:B
8 1c3m:A 145 142 0.3448 0.3448 0.3521 2.74e-13 1c3n:A
9 1xxr:B 154 146 0.3034 0.2857 0.3014 7.85e-09 1xxr:C, 1xxr:D
10 5m6o:A 150 156 0.3310 0.3200 0.3077 4.18e-07 5m6o:B, 5m6o:C, 5m6o:D, 5tqz:A, 5tqz:B, 5tqz:C, 5tqz:D
11 5xfi:A 152 146 0.3379 0.3224 0.3356 1.19e-06 5av7:A, 5av7:B, 5av7:C, 5av7:D, 5xfi:B
12 1j4u:A 149 82 0.2000 0.1946 0.3537 6.45e-06 1j4u:B, 1j4u:C, 1j4u:D, 1vbo:A, 1vbo:B, 1vbo:C, 1vbo:E, 1vbo:G, 1vbo:H, 1vbo:D, 1vbo:F, 1vbp:A, 1vbp:B
13 4ddn:A 154 68 0.1724 0.1623 0.3676 3.69e-04 4ddn:B, 4ddn:C, 4ddn:D, 3r51:A, 3r52:A, 3r52:B, 3r52:C, 3r52:D
14 1jot:A 133 72 0.1793 0.1955 0.3611 0.002 3lly:A, 3llz:A, 3lm1:A, 3lm1:E, 3lm1:M, 3lm1:C, 3lm1:G, 3lm1:K, 3lm1:I, 3lm1:O
15 3apa:A 138 86 0.1931 0.2029 0.3256 0.030 3vy6:A, 3vy7:A, 3vze:A, 3vzf:A, 3vzg:A
16 1y2u:A 142 66 0.1241 0.1268 0.2727 2.1 1y2u:B, 1y2v:A, 1y2v:B, 1y2w:A, 1y2w:B, 1y2x:A, 1y2x:B, 1y2x:C, 1y2x:D
17 5dhm:C 268 122 0.2069 0.1119 0.2459 4.2 5dhm:D
18 3au2:A 575 55 0.1172 0.0296 0.3091 4.6 3au6:A, 3auo:A, 3auo:B, 3b0x:A, 3b0y:A
19 6hwm:E 195 39 0.0897 0.0667 0.3333 4.8 6hwm:A, 6hwm:B, 6hwm:C, 6hwm:D, 6hwm:F, 6hwm:G, 6hwn:A, 6hwn:B, 6hwn:C, 6hwn:D, 6hwn:E, 6hwn:F, 6hwn:G
20 8xvf:A 251 36 0.1034 0.0598 0.4167 6.5 8xvf:B, 8xvf:C, 8xvf:D, 8xvf:E, 8xvf:F, 8xvf:G, 8xvf:H
21 8cip:A 665 48 0.0897 0.0195 0.2708 8.0 8cip:B, 8cip:C, 8cip:D
22 2o14:A 354 40 0.0828 0.0339 0.3000 9.3
23 8bie:A 318 76 0.1655 0.0755 0.3158 9.7 8bie:B, 8bij:A, 8bij:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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