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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTKYKYTVEESERFNKHGIDLTVYGQVDPSATVVRVSVERGHFQEFFNVRSSYTFYVVSGQGVFYLNSEAVPAGATDLIT
VPPNTRIHYFGSMEMVLTVAPAFNEQDERHVRFISESESPY

The query sequence (length=121) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5oo4:A 121 121 0.9917 0.9917 0.9917 1.29e-86 5oo5:A, 5oo8:A, 5oo9:A, 5ooa:A
2 4h7l:B 117 62 0.1405 0.1453 0.2742 0.53 4h7l:A
3 1o4t:A 115 25 0.0826 0.0870 0.4000 2.0 1o4t:B
4 4e2q:A 258 43 0.1074 0.0504 0.3023 2.0 4e2q:B, 4e2q:C, 4e2q:D, 4e2q:E, 4e2q:F, 4e2q:G, 4e2q:H, 4e2q:I, 4e2q:J, 4e2q:K, 4e2q:L, 4e2q:M, 4e2q:N, 4e2q:O, 4e2q:P, 4e2s:A, 4e2s:B, 4e2s:C, 4e2s:D, 4e2s:E, 4e2s:F, 4e2s:G, 4e2s:H, 4e2s:I, 4e2s:J, 4e2s:K, 4e2s:L, 4e2s:M, 4e2s:N, 4e2s:O, 4e2s:P
5 7pay:A 329 58 0.1322 0.0486 0.2759 2.4 7pax:A, 7pb0:A, 7pb1:A, 6w2l:A, 6z1n:A
6 2h0v:A 335 44 0.0992 0.0358 0.2727 4.1 2h0v:B, 8hfb:A, 8hfb:B, 1y3t:A, 1y3t:B
7 3vss:A 494 43 0.1157 0.0283 0.3256 5.1
8 7zyb:A 112 67 0.1653 0.1786 0.2985 5.2 7zyc:A
9 7zcu:B 46 22 0.0992 0.2609 0.5455 5.8 7zcu:D, 7zcu:N, 7zcu:H, 7zcu:L, 7zcu:P, 7zcu:J, 7zcu:R, 7zcu:F
10 6kqx:A 327 24 0.0744 0.0275 0.3750 8.1
11 7vlb:B 353 24 0.0744 0.0255 0.3750 8.3
12 7zvy:A 112 64 0.1405 0.1518 0.2656 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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