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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTKLILIRAGETEWNLLGKIQGCTDIELTPNGIQQANEVAQQIKGNFDIIYSSPLHRALITAQKIAGDKEVHLIEGMKEI
PFGTWEGHTFEELNGDINYKKFLSGEDGCPFDSTGMSIASWSKKNAQLLLDLCKQNENKTIVCVSHGAWIKTSILGLLEM
EPTMYHKFQLGNTGITTFIFRHGHPVLTSFNSTQHLLT

The query sequence (length=198) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zr2:C 198 198 1.0000 1.0000 1.0000 2.01e-148 6m1x:C, 6m1x:D, 5zr2:A, 5zr2:B, 5zr2:D
2 4ij6:A 207 201 0.3232 0.3092 0.3184 2.83e-26 4ij6:B
3 1h2e:A 207 156 0.2273 0.2174 0.2885 1.92e-13 1h2f:A
4 4pza:B 217 157 0.2121 0.1935 0.2675 4.88e-09 4pza:A, 4qih:A, 4qih:B
5 3gp5:A 248 64 0.1364 0.1089 0.4219 5.42e-08 3fdz:A, 3gp3:A, 3gp3:B, 3gp3:C, 3gp3:D, 3gp5:B, 3gw8:A, 3gw8:B
6 1e59:A 239 64 0.1162 0.0962 0.3594 2.96e-07
7 7xb8:B 249 62 0.1212 0.0964 0.3871 1.49e-06 6isn:C, 8it4:A, 8it4:B, 8it5:C, 8it6:C, 8it7:C, 8it8:C, 8itb:C, 8itc:C, 8itd:C, 7xb7:B, 7xb7:C, 7xb8:C, 7xb9:B, 7xb9:C, 5y2i:B, 5y2u:B, 5y2u:C, 5y35:C, 5y64:C, 5y65:C, 1yfk:A, 1yjx:B, 1yjx:C, 1yjx:D, 1yjx:E, 1yjx:G, 1yjx:I, 1yjx:J, 1yjx:K, 1yjx:L, 5zrm:C, 5zs8:C
8 1qhf:A 240 63 0.1212 0.1000 0.3810 5.36e-06 1bq3:D, 1bq3:A, 1bq4:A, 5pgm:E, 1qhf:B
9 1bif:A 432 160 0.2121 0.0972 0.2625 7.27e-05 2bif:A, 2bif:B
10 2h4z:A 255 63 0.1061 0.0824 0.3333 9.66e-05 2f90:A, 2f90:B, 2h4z:B, 2hhj:A, 2hhj:B, 7n3r:B, 7n3s:A, 7n3s:B, 7thi:A, 7thi:B
11 3lg2:A 269 107 0.1515 0.1115 0.2804 1.45e-04 3lg2:B, 3lg2:C, 3lg2:D, 3ll4:A, 3ll4:B, 3oi7:A, 3oi7:B, 3oi7:C, 3oi7:D
12 1k6m:A 432 160 0.2071 0.0949 0.2562 0.002 1c7z:A, 1c7z:B, 1c80:A, 1c80:B, 1c81:A, 1fbt:A, 1fbt:B, 1k6m:B, 1tip:A, 1tip:B
13 3d1l:B 259 104 0.1313 0.1004 0.2500 0.049
14 4v3p:Lg 120 47 0.0808 0.1333 0.3404 0.071 8ip8:SA, 8ipa:SA, 8ipb:SA, 8jiv:Cd, 4v7e:Cd
15 5htk:A 425 158 0.1869 0.0871 0.2342 0.13 5hr5:A, 5htk:B
16 2axn:A 451 160 0.2020 0.0887 0.2500 0.32 5ajv:B, 5ajw:A, 5ajx:A, 5ajy:A, 5ajz:A, 5ak0:A, 4d4j:A, 4d4k:A, 4d4l:A, 4d4m:A, 2dwo:A, 2dwp:A, 6etj:A, 6hvh:A, 6hvi:A, 6hvj:A, 2i1v:B, 6ibx:A, 6iby:A, 6ibz:A, 6ic0:A, 4ma4:A, 3qpu:A, 3qpv:A, 3qpw:A
17 7c9r:C 311 102 0.1263 0.0804 0.2451 1.8
18 6d4b:A 361 70 0.1010 0.0554 0.2857 2.4 6d4b:B, 6d4c:A, 6d4c:B, 5dn9:A, 5dn9:B
19 4r1m:A 435 44 0.0606 0.0276 0.2727 4.2 4r1l:A, 4r1l:B, 4r1l:C, 4r1l:D, 4r1m:B, 4r1m:C, 4r1m:D, 4rvn:A, 4rvn:B, 4rvn:C, 4rvn:D, 4rvo:A, 4rvo:B, 4rvo:C, 4rvo:D
20 1dq3:A 454 61 0.1212 0.0529 0.3934 4.8
21 6lod:B 929 39 0.0657 0.0140 0.3333 7.5 6loe:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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