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BioLiP
>protein
MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7oui:Z 62 62 1.0000 1.0000 1.0000 4.55e-36 3jcu:Z, 3jcu:z, 7oui:z, 5xnl:Z, 5xnl:z, 5xnm:Z, 5xnm:z
2 7pi5:Z 61 59 0.5323 0.5410 0.5593 1.15e-16 7pi5:z, 7pin:Z, 7pin:Z1, 7pin:z1, 7piw:Z, 7piw:z, 7pnk:Z
3 3a0b:Z 62 58 0.5000 0.5000 0.5345 1.46e-16 3a0b:z, 3a0h:Z, 3a0h:z, 2axt:Z, 2axt:z, 5b5e:Z, 5b5e:z, 5b66:Z, 5b66:z, 7cji:Z, 7cji:z, 7cjj:Z, 7cjj:z, 7cou:Z, 7cou:z, 7czl:z, 7d1t:Z, 7d1t:z, 7d1u:Z, 7d1u:z, 6dhe:Z, 6dhe:z, 6dhf:Z, 6dhg:Z, 6dhh:Z, 6dho:Z, 6dhp:Z, 5e79:Z, 5e79:z, 5e7c:Z, 5e7c:z, 7eda:Z, 9evx:Z, 9evx:z, 8ez5:Z, 8f4c:Z, 8f4d:Z, 8f4e:Z, 8f4f:Z, 8f4g:Z, 8f4h:Z, 8f4i:Z, 8f4j:Z, 8f4k:Z, 4fby:Z, 4fby:l, 8gn0:Z, 8gn1:z, 8gn1:Z, 8gn2:Z, 8gn2:z, 5gth:Z, 5gth:z, 5gti:Z, 5gti:z, 5h2f:Z, 5h2f:z, 8ir5:Z, 8ir5:z, 8ir6:Z, 8ir6:z, 8ir7:Z, 8ir7:z, 8ir8:Z, 8ir8:z, 8ir9:Z, 8ir9:z, 8ira:Z, 8ira:z, 8irb:Z, 8irb:z, 8irc:Z, 8irc:z, 8ird:Z, 8ird:z, 8ire:Z, 8ire:z, 8irf:Z, 8irf:z, 8irg:Z, 8irg:z, 8irh:Z, 8irh:z, 8iri:Z, 8iri:z, 4ixq:Z, 4ixq:z, 4ixr:Z, 4ixr:z, 6jlj:Z, 6jlj:z, 6jlk:Z, 6jlk:z, 6jll:Z, 6jll:z, 6jlm:Z, 6jlm:z, 6jln:Z, 6jln:z, 6jlo:Z, 6jlo:z, 6jlp:Z, 6jlp:z, 5kaf:Z, 5kaf:z, 5kai:Z, 5kai:z, 3kzi:Z, 5mx2:Z, 5mx2:z, 7nho:Z, 7nhp:Z, 7nhq:Z, 4pbu:Z, 4pbu:z, 4pj0:Z, 4pj0:z, 7rf1:Z, 7rf2:Z, 7rf3:Z, 7rf4:Z, 7rf4:z, 7rf5:Z, 7rf6:Z, 7rf7:Z, 7rf8:Z, 4rvy:Z, 4rvy:z, 5tis:Z, 4tnh:Z, 4tnh:z, 4tni:Z, 4tni:z, 4tnj:Z, 4tnj:z, 4tnk:Z, 4tnk:z, 4ub6:Z, 4ub6:z, 4ub8:z, 5v2c:Z, 5v2c:z, 4v62:AZ, 4v62:BZ, 4v82:AZ, 4v82:BZ, 6w1o:Z, 6w1p:Z, 6w1q:Z, 6w1q:z, 6w1r:Z, 6w1u:Z, 6w1v:Z, 5ws5:Z, 5ws5:z, 5ws6:Z, 5ws6:z, 3wu2:Z, 3wu2:z, 7yq7:Z, 7yq7:z, 5zzn:Z, 5zzn:z
4 7y5e:z6 60 59 0.5000 0.5167 0.5254 1.87e-16 7y5e:ZL, 7y7a:Z9, 7y7a:ZE, 7y7a:zO, 7y7a:zZ, 7y7a:Zm
5 8wql:ZD 60 60 0.4355 0.4500 0.4500 3.24e-13 8wql:ZE, 8wql:Z1
6 7n8o:Z 60 60 0.3710 0.3833 0.3833 2.06e-10 7n8o:z, 7rcv:Z, 7rcv:z, 8tow:Z, 8tow:z
7 8xlp:z 61 61 0.4032 0.4098 0.4098 5.05e-10 8xlp:Z
8 4yuu:Z2 59 58 0.3548 0.3729 0.3793 8.35e-10 4yuu:z2
9 8wb4:z 61 56 0.3548 0.3607 0.3929 3.49e-08 8wb4:Z, 8xr6:Z, 8xr6:z
10 7ymi:Z 59 56 0.2742 0.2881 0.3036 1.40e-04 7ymi:z, 7ymm:1Z, 7ymm:2Z, 7ymm:3Z, 7ymm:4Z
11 8iwh:Z 61 39 0.2258 0.2295 0.3590 0.004 8j5k:Z, 8j5k:z, 6jlu:Z, 6jlu:z
12 8fhd:A 1294 44 0.2581 0.0124 0.3636 0.026
13 8gz2:B 1174 36 0.2258 0.0119 0.3889 0.027 8gz1:B
14 7ehp:A 397 26 0.1774 0.0277 0.4231 1.1 7ehp:B
15 4hss:A 411 28 0.1774 0.0268 0.3929 2.1 4hsq:A, 4hss:B
16 6j3y:Z 59 44 0.2097 0.2203 0.2955 3.2 6j3y:z, 6j3z:Z, 6j3z:z, 6j40:Z, 6j40:z, 7vd5:Z, 7vd5:z
17 6agf:A 1138 36 0.1935 0.0105 0.3333 4.2
18 6j8e:A 1139 36 0.1613 0.0088 0.2778 5.7 7dtd:A, 7w77:D, 7w7f:D
19 5ywn:A 333 30 0.1935 0.0360 0.4000 6.4 5yw4:A
20 7mys:A 239 35 0.2097 0.0544 0.3714 8.5 7mys:B
21 5whs:A 713 20 0.0968 0.0084 0.3000 8.7 5whq:A, 5whq:B, 5whs:B
22 8xmn:A 1277 44 0.1774 0.0086 0.2500 8.8 8i5b:A, 8i5g:A, 8i5x:A, 8i5y:A, 8j4f:A, 8s9b:A, 8s9c:A, 8thg:A, 8thh:A, 7xve:A, 7xvf:A
23 7w9l:A 1420 44 0.1774 0.0077 0.2500 8.9 8g1a:A, 7w9k:A, 7w9m:A, 7w9p:A, 7w9t:A, 8xmo:A
24 7xm9:A 1230 44 0.1774 0.0089 0.2500 9.0 6j8g:A, 6j8h:A, 6j8i:A, 6j8j:A, 7xmf:A, 7xmg:A, 8xmm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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