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BioLiP
>protein
MTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSKDEGQKVSFTIESGAKAPAAGNVTSL

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ot5:B 66 66 1.0000 1.0000 1.0000 1.51e-43
2 2es2:A 67 64 0.5758 0.5672 0.5938 2.44e-21 3pf4:B, 3pf5:B, 3pf5:A
3 1c9o:A 66 64 0.5606 0.5606 0.5781 8.59e-21 1c9o:B, 2hax:A, 2hax:B
4 7oii:B 39 39 0.4848 0.8205 0.8205 1.01e-18
5 6a6j:A 90 68 0.4242 0.3111 0.4118 1.78e-11 6a6j:C, 6a6l:A, 6ktc:A, 6kug:A, 6lmr:A, 5yts:A, 5ytt:A, 5ytv:A, 5ytx:A
6 7f3i:A 93 68 0.4242 0.3011 0.4118 3.21e-11 7f3i:C, 7f3i:E, 7f3j:A, 7f3j:C, 7f3j:E, 7f3j:G, 7f3k:A, 7f3l:A
7 5udz:A 139 70 0.4242 0.2014 0.4000 3.03e-10 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
8 4a75:A 89 70 0.4091 0.3034 0.3857 7.28e-10 4a75:C, 4a75:E, 4a75:G, 4a76:A, 4a76:G, 4a76:C, 4a76:E, 4alp:A, 4alp:D
9 5xgu:A 631 36 0.2273 0.0238 0.4167 0.14 5xgu:B
10 5o2w:A 248 47 0.2273 0.0605 0.3191 0.35 5o2x:A
11 8cdu:C 708 52 0.2424 0.0226 0.3077 0.54 8cec:C, 8ced:C, 8cee:C
12 6snh:X 479 37 0.1818 0.0251 0.3243 2.2 6sni:X
13 1yw1:A 393 43 0.2424 0.0407 0.3721 3.7
14 3gri:B 423 51 0.2576 0.0402 0.3333 3.8 3gri:A
15 6asl:A 430 43 0.2424 0.0372 0.3721 4.7
16 6zcv:A 562 40 0.1818 0.0214 0.3000 5.0 6zcw:A
17 7pnv:D 343 37 0.2121 0.0408 0.3784 5.2 7pnt:D, 7pnu:D, 7pnw:D
18 7c5x:A 506 20 0.1364 0.0178 0.4500 7.1 7c5x:B
19 5l8e:A 517 42 0.1667 0.0213 0.2619 7.7
20 1rbo:L 467 45 0.1970 0.0278 0.2889 7.8 1aa1:L, 1aa1:B, 1aa1:E, 1aa1:H, 1aus:L, 1aus:M, 1aus:N, 1aus:O, 3axk:A, 3axk:B, 1ej7:L, 1ir1:A, 1ir1:B, 1ir1:C, 1ir1:D, 5iu0:A, 5iu0:B, 8qj0:L, 8qj0:M, 8qj0:N, 8qj0:O, 1rbo:B, 1rbo:E, 1rbo:H, 1rco:L, 1rco:B, 1rco:E, 1rco:H, 1rco:K, 1rco:O, 1rco:R, 1rco:V, 1rcx:L, 1rcx:B, 1rcx:E, 1rcx:H, 1rcx:K, 1rcx:O, 1rcx:R, 1rcx:V, 4rub:A, 4rub:D, 4rub:B, 4rub:C, 8ruc:A, 8ruc:C, 8ruc:E, 8ruc:G, 1rxo:L, 1rxo:B, 1rxo:E, 1rxo:H, 1upm:B, 1upm:L, 1upm:E, 1upm:H, 1upm:K, 1upm:O, 1upm:R, 1upm:V, 1upp:A, 1upp:C, 1upp:E, 1upp:G, 1wdd:A, 1wdd:E, 5wsk:A, 5wsk:B, 5wsk:C, 5wsk:D
21 6gdd:A 375 26 0.1515 0.0267 0.3846 8.3 6gde:A, 6gdf:A, 1xrf:A, 1xrt:A, 1xrt:B
22 4bjh:A 422 26 0.1515 0.0237 0.3846 8.4 3d6n:A
23 5kjq:A 180 29 0.1970 0.0722 0.4483 9.0 3x2g:A, 3x2h:A, 3x2i:A, 3x2k:A, 3x2l:A, 3x2m:A, 3x2p:A
24 4q2t:A 590 28 0.2273 0.0254 0.5357 9.2 4q2t:B, 4q2x:A, 4q2x:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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