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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILGMFDLDERIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIV
KGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLN

The query sequence (length=151) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3nbk:D 163 157 1.0000 0.9264 0.9618 1.43e-107 6g6v:A, 3lcj:A, 3nba:A, 3nba:B, 3nba:C, 3nba:D, 3nbk:A, 3nbk:B, 3nbk:C, 3pnb:A, 3pnb:B, 3pnb:C, 3pnb:D, 6qmf:A, 6qmg:A, 6qmh:A, 6qmi:A, 3rba:A, 3rhs:A, 3uc5:A
2 5o08:A 160 156 0.7947 0.7500 0.7692 5.49e-84 5o08:B, 5o08:C, 5o0a:A, 5o0a:B, 5o0a:C, 5o0b:A, 5o0b:B, 5o0b:C, 5o0c:A, 5o0c:B, 5o0c:C, 5o0d:B, 5o0d:C, 5o0f:B, 5o0f:C, 5o0h:B, 5o0h:C, 8qid:A, 8qid:B, 8qid:C, 8qix:B, 8qix:C, 8qiy:A, 8qiy:B, 8qj8:A, 8qj8:B, 8qj8:C, 7ywm:A, 7ywm:B, 7ywm:C, 7yxz:A, 7yxz:B, 7yxz:C, 7yy0:B, 7yy0:C, 7yy1:A, 7yy1:B, 7yy1:C, 7yy2:A, 7yy2:B, 7yy2:C, 7yy3:A, 7yy3:B, 7yy3:C, 7yy4:B, 7yy4:C, 7yy5:B, 7yy5:C, 7yy6:A, 7yy6:B, 7yy6:C, 7yy7:B, 7yy7:C, 7yy8:B, 7yy8:C, 7yy9:A, 7yy9:B, 7yy9:C, 7yya:A, 7yya:B, 7yyb:B, 7yyb:C, 7yyc:A, 7yyc:B, 7yyc:C
3 1od6:A 155 150 0.4967 0.4839 0.5000 1.76e-49
4 1vlh:B 158 155 0.4901 0.4684 0.4774 8.56e-47 1vlh:A, 1vlh:F, 1vlh:C, 1vlh:D, 1vlh:E
5 4nah:C 160 157 0.4437 0.4188 0.4268 3.30e-45 3f3m:A, 4nah:A, 4nah:B, 4nah:D, 4nah:E, 4nah:F, 4nat:A, 4nat:B, 4nat:C, 4nau:A, 4nau:B, 4nau:C
6 9iye:B 173 157 0.4437 0.3873 0.4268 3.05e-42 8i8j:A, 8i8j:B, 8i8j:C, 8i8j:D, 8i8j:E, 8i8j:F, 8i8k:A, 8i8k:B, 8i8k:C, 8i8k:D, 8i8k:E, 8i8k:F, 8i8l:A, 8i8l:B, 8i8l:C, 8i8l:D, 8i8l:E, 8i8l:F, 8i8m:A, 8i8m:B, 8i8m:C, 8i8m:D, 8i8m:E, 8i8m:F, 8i8n:A, 8i8n:B, 8i8n:C, 8i8n:D, 8i8n:E, 8i8n:F, 8i8o:A, 8i8o:B, 8i8o:C, 8i8o:D, 8i8o:E, 8i8o:F, 9iye:A, 9iye:C, 9iye:D, 9iye:E, 9iye:F, 9iyf:A, 9iyf:B, 9iyf:C, 9iyf:D, 9iyf:E, 9iyf:F, 9iyh:A, 9iyh:B, 9iyh:C, 9iyh:D, 9iyh:E, 9iyh:F, 8zn2:A, 8zn2:B, 8zn2:C, 8zn2:D, 8zn2:E, 8zn2:F, 8zn3:A, 8zn3:B, 8zn3:C, 8zn3:D, 8zn3:E, 8zn3:F
7 3l92:A 159 157 0.4371 0.4151 0.4204 3.50e-41
8 6cck:B 160 154 0.4371 0.4125 0.4286 1.29e-40 1b6t:B, 6b7a:A, 6b7a:B, 6b7b:A, 6b7b:B, 6b7c:A, 6b7c:B, 6b7d:A, 6b7e:B, 6b7f:A, 6b7f:B, 6cck:A, 6ccl:A, 6ccl:B, 6ccm:A, 6ccn:A, 6ccn:B, 6cco:A, 6ccq:A, 6ccq:B, 6ccs:A, 6ccs:B, 6chl:A, 6chl:B, 6chm:A, 6chm:B, 6chn:A, 6chn:B, 6cho:A, 6cho:B, 6chp:A, 6chp:B, 6chq:A, 6ckw:A, 6ckw:B, 1gn8:A, 1gn8:B, 1h1t:A, 1h1t:B, 1qjc:B
9 1o6b:A 163 154 0.4305 0.3988 0.4221 1.34e-40
10 5ts2:A 165 158 0.4106 0.3758 0.3924 3.00e-38 4ruk:A, 4ruk:F, 4ruk:B, 4ruk:E, 4ruk:C, 4ruk:D, 5ts2:B, 5ts2:C, 5ts2:D, 5ts2:E, 5ts2:F, 3x1j:A, 3x1j:C, 3x1j:B, 3x1k:A, 3x1k:B, 3x1k:C, 3x1k:D, 3x1k:E, 3x1k:F, 3x1m:A, 3x1m:C, 3x1m:B
11 6a6d:A 163 148 0.4238 0.3926 0.4324 8.40e-38 6a75:A, 6a7d:A, 8i8p:A, 6j3m:A, 6jnh:A, 6jog:A, 6kkw:A, 5yh7:A, 5yrr:A, 5zzc:A
12 3k9w:A 163 157 0.4238 0.3926 0.4076 7.32e-37 3pxu:A
13 3nd6:A 152 148 0.3907 0.3882 0.3986 1.75e-36 3nd6:B, 3nd6:C, 3nd6:D, 3nd6:E, 3nd6:F, 3nd7:A, 3nd7:B, 3nd7:C, 3nd7:D, 3nd7:E, 3nd7:F
14 4f3r:B 149 147 0.3907 0.3960 0.4014 2.01e-32
15 3otw:A 157 145 0.3311 0.3185 0.3448 5.77e-24 3otw:D, 3otw:B, 3otw:C, 3otw:E, 3otw:F
16 1coz:A 126 35 0.0927 0.1111 0.4000 0.079 1coz:B, 1n1d:A, 1n1d:B, 1n1d:C, 1n1d:D
17 1f9a:A 164 53 0.0993 0.0915 0.2830 0.27 1f9a:B, 1f9a:C, 1f9a:D, 1f9a:E, 1f9a:F
18 3glv:B 122 61 0.1060 0.1311 0.2623 1.1
19 5ixh:B 161 35 0.0861 0.0807 0.3714 1.4 5ixh:A
20 6eew:A 479 82 0.1656 0.0522 0.3049 3.5 6eew:B, 6eew:C, 6eew:D
21 1k4m:A 213 42 0.0795 0.0563 0.2857 5.1 1k4m:B, 1k4m:C
22 2vbi:A 554 70 0.1325 0.0361 0.2857 5.5 2vbi:B, 2vbi:C, 2vbi:D, 2vbi:E, 2vbi:F, 2vbi:G, 2vbi:H
23 5kha:A 526 61 0.1258 0.0361 0.3115 5.5 5kha:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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