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BioLiP
>protein
MTFAKIKFSAQIRLETGLHIGGSDAFAAIGAINSPVIKDPITNLPIIPGSSLKGKMRTLLAKVYNEKVAEKPSDDSDILS
RLFGNSKDKRFKMGRLIFRDAFLSNADELDSLGVRSYTEVKFENTIDRITAEANPRQIERAIRNSTFDFELIYEITDENE
NQVEEDFKVIRDGLKLLELDYLGGSGSRGYGKVAFENLKATTVFGNYDVKTLNELLT

The query sequence (length=217) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ifn:F 220 217 0.9954 0.9818 0.9954 2.21e-157 6ifk:G, 6ifk:F, 6ifk:E, 6ifl:D, 6ifl:E, 6ifl:F, 6ifn:E, 6ifn:G, 6ifr:G, 6ifr:F, 6ifr:E, 6ifu:D, 6ifu:E, 6ifu:F, 6ify:G, 6ify:F, 6ify:E, 6ifz:G, 6ifz:F, 6ifz:E, 6ig0:G, 6ig0:F, 6ig0:E, 6nud:C, 6nud:E, 6nud:N, 6nud:O, 6nud:P, 6nue:C, 6nue:E, 6nue:N, 6nue:O, 6nue:P
2 9ash:H 214 214 0.5392 0.5467 0.5467 4.69e-72 9ash:F, 9ash:G, 9ash:I, 9asi:F, 9asi:H, 9asi:G, 9asi:I, 6xn3:F, 6xn3:H, 6xn3:G, 6xn3:I, 6xn4:F, 6xn4:H, 6xn4:G, 6xn5:I, 6xn5:F, 6xn5:H, 6xn5:G, 6xn7:F, 6xn7:H, 6xn7:G, 6xn7:I
3 8x5d:K 235 228 0.5023 0.4638 0.4781 4.81e-70 8wfx:I, 8wfx:J, 8wfx:K, 8wfx:L, 8wfx:G, 8wfx:H, 8x5d:L, 8x5d:J, 8x5d:I, 8x5d:H
4 8do6:E 205 211 0.4885 0.5171 0.5024 1.11e-52 8do6:G, 8do6:F, 7uzw:A, 7uzw:B, 7uzw:C, 7uzw:D, 7uzx:A, 7uzx:B, 7uzx:C, 7uzx:D, 7uzy:D, 7uzy:C, 7uzy:A, 7uzy:B, 7uzz:D, 7uzz:C, 7uzz:A, 7uzz:B, 7v00:A, 7v00:B, 7v00:C, 7v00:D, 7v01:A, 7v01:B, 7v01:C, 7v02:A, 7v02:B, 7v02:C
5 6mur:D 287 257 0.4147 0.3136 0.3502 3.33e-41 6iqw:C, 6iqw:D, 6mur:C, 6mus:C, 6mus:D, 6mus:K, 6mut:C, 6mut:D, 6muu:C, 6muu:D, 6o7e:C, 6o7e:D, 6o7h:C, 6o7h:D, 6o7i:C, 6o7i:D, 6o7i:K
6 7uzw:E 184 212 0.4009 0.4728 0.4104 1.54e-32 7uzx:E
7 4qts:C 186 226 0.3318 0.3871 0.3186 1.56e-21 4qts:D
8 4n0l:A 335 258 0.3134 0.2030 0.2636 2.56e-17 4n0l:B
9 8x5d:G 77 85 0.1567 0.4416 0.4000 3.25e-10
10 8x5d:G 77 79 0.1060 0.2987 0.2911 2.6
11 8yhd:B 199 183 0.2396 0.2613 0.2842 2.93e-05 8yhd:C, 8yhd:D, 8yhd:E, 8yhd:F, 8yhd:J, 8yhd:O, 8yhe:B, 8yhe:C, 8yhe:D, 8yhe:E, 8yhe:F, 8yhe:J, 8z4j:C, 8z4j:D, 8z4j:E, 8z4j:F, 8z4j:J, 8z4l:B, 8z4l:C, 8z4l:D, 8z4l:E, 8z4l:F, 8z4l:J, 8z99:B, 8z99:C, 8z99:D, 8z99:E, 8z99:F, 8z99:J, 8z99:P, 8z9c:B, 8z9c:C, 8z9c:D, 8z9c:E, 8z9c:F, 8z9c:J, 8z9e:C, 8z9e:D, 8z9e:E, 8z9e:F, 8z9e:J
12 8z9e:B 170 167 0.2074 0.2647 0.2695 0.004 8yhd:A, 8z4j:B, 8z4l:A, 8z99:A, 8z9c:A
13 8bmw:F 239 55 0.0968 0.0879 0.3818 0.004 8bmw:G
14 6s6b:I 284 153 0.1843 0.1408 0.2614 0.009 6s8b:I, 6s8e:I, 6s91:I, 6sh8:I, 6shb:I, 6sic:I
15 8s9u:D 518 204 0.2350 0.0985 0.2500 0.013 8s9t:D, 8s9v:D, 8s9x:D
16 8bmw:N 251 230 0.2719 0.2351 0.2565 0.029
17 6ifr:H 353 47 0.1014 0.0623 0.4681 0.085 6ifk:H, 6ifl:H, 6ifn:H, 6ifu:H, 6ify:H, 6ifz:H, 6ig0:H
18 8bmw:H 275 204 0.2350 0.1855 0.2500 0.15 8bmw:I
19 3x1l:D 331 43 0.0691 0.0453 0.3488 0.78 3x1l:C, 3x1l:E
20 8x5d:N 370 36 0.0599 0.0351 0.3611 2.5
21 8kaq:D 364 46 0.0737 0.0440 0.3478 3.2
22 5kwk:B 457 96 0.1244 0.0591 0.2812 4.5 5koe:A, 5kor:B, 5kor:C, 5kor:A, 5kor:D, 5kwk:A, 5kx6:A, 5kx6:B
23 9ash:J 311 14 0.0507 0.0354 0.7857 4.6 9asi:J, 6xn3:J, 6xn4:J, 6xn5:J, 6xn7:J
24 4ykn:A 1205 132 0.1429 0.0257 0.2348 4.7 4a55:A, 8am0:A, 8exl:A, 8exo:A, 8exu:A, 8exv:A, 5fi4:A, 8gub:A, 6gvf:A, 6gvg:A, 6gvi:A, 3hhm:A, 7jiu:A, 4jps:A, 4l23:A, 4l2y:A, 7mlk:A, 7myo:A, 4ovv:A, 8ow2:A, 7pg6:A, 6pys:A, 5sx9:A, 5sxj:A, 8tdu:A, 8tdu:C, 8tgd:A, 8tgd:C, 8ts9:A, 8tsa:A, 8tsb:A, 8tsc:A, 8tsd:A, 4tv3:A, 5uk8:A, 5ukj:A, 5ul1:A, 8v8h:A, 8v8h:C, 8v8i:A, 8v8i:C, 8v8j:A, 8v8j:C, 8v8v:A, 8v8v:C, 8w9a:A, 8w9b:A, 4waf:A, 5xgh:A, 5xgi:A, 3zim:A, 4zop:A
25 3klj:A 378 44 0.0691 0.0397 0.3409 5.0
26 8do6:H 327 111 0.1429 0.0948 0.2793 5.9 7uzz:E, 7v00:E, 7v01:E, 7v02:E
27 8wfx:N 265 36 0.0645 0.0528 0.3889 6.8
28 6muu:F 323 14 0.0507 0.0341 0.7857 7.0
29 7bxo:E 125 31 0.0645 0.1120 0.4516 7.2 7aer:A, 7bxo:A, 6m6v:A
30 6mur:F 377 14 0.0507 0.0292 0.7857 8.3 6iqw:F, 6mus:F, 6mut:F
31 6o7e:Y 361 14 0.0507 0.0305 0.7857 8.8 6o7h:F, 6o7i:F
32 4bq8:C 161 40 0.0599 0.0807 0.3250 9.8 4bq6:D, 4bq6:F, 4bq7:D, 4bq7:F, 7ndg:F, 7ndg:C, 7ndg:I, 7ne0:D, 6z3m:c, 6z3m:d, 6z3m:i, 6z3m:j, 6z3m:o, 6z3m:p

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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